Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_56005 |
Symbol | |
ID | 4837358 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009042 |
Strand | + |
Start bp | 1274321 |
End bp | 1276540 |
Gene Length | 2220 bp |
Protein Length | 719 aa |
Translation table | 12 |
GC content | 40% |
IMG OID | 640388673 |
Product | predicted protein |
Protein accession | XP_001382465 |
Protein GI | 150863848 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.410085 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCCTC GTCAACAGAG CATTGGAAGA TTCTTTGGAT CTGGTGCTAC ATTGAAGAGA GCACGCGAGG GCGATACTGA AGGAATAAAA AAGCCCAAAA CAGCAATGTC AGTTGACCTG TTGTTATCTC AGACTGTCAA TAAGCTGCCT AAAAACCAAA AATCAGAATC TCTTACCGAT GAACAAAACA AAAGAGAAGC TTTCCAAGTA TCTCAGCAAG AGTCCGAAAA AGATCAGGAA CAGAAGCCGG ATACGGATCC AAGCGAAAGT GAGCCTGAAA AGGACAAAAC AGAAGAAATA AAAGAAGCAT CGGAGTTGAT AAAGTTGTCA GAGAAAGAAC ATGAAAAACA TGTGGGAGAG AAGCTTTCAG CCAAAATCCC CTACTCTAAG TTGACAGATG TTTTGGACAA GATTGAAGCT GAATCTTCAA GATTGAAAAT AACAGCCATC GTCTCTGAAT TTTTCCTAGA AATCTTGAAG CAATCGACTG TGGATAAACT TGTAAAGATT GTGTATTTGT TCATCAACAG ATTGGGGCCA GACTATGAGC CAGACTTAGA GCTTGGTCTT GGTGAAACTA TCTTGATCAA GGCTATCAGC GAATGTTACG GAAGACCTAG CACCAAAATC AAGAAGGATT ATCAAGAAGT TGGTGATCTT GGCTTAGTCG CTCAGAAATC AAGATCTGGA CAACCCACCA TGTTCAAACC AGCACCCTTA GATGTAGACC AGGTGTTTGA AAACCTTACA AAGATTGCCA AATCCACTGG TAAGGATTCG CAGGCTAAGA AGATCTCGTT AATCAACAAA ATGTTGACCG CATGTAATGC CAAATCTTCT GAAGCTAAAT TCTTGATTAG ATCTTTGGAG GGTAAGTTGA GAATCGGTCT TGCCGAAAAG ACAGTATTGA TTGGTCTTGC TCAAGCTTTT GTCAACTATG AAGCAAAAGA CTCCAAGAGA ATAAACCCAG AAAAGTTGAC TCAATCTGAA GATGTAGTTA GAGAAGCATT TTCTCAAATC CCAAACTACG AGATATTGAT AAGAAACGCA TACGAGTATG GCATTTTCAA CTTGTTAGAC CATTGCCAAT TAACGCCTGG AATACCTCTC AAGCCGATGT TGGCCAAGCC TACAAAGTCT ATTAGTGAAG TCTTGGATCG GTTCCAAGGA GAGGAGTTCA CATGTGAGTA TAAGTACGAT GGCGAAAGAG CTCAGGTACA TCTTTTACAT GATGGCACTG TAAGAATCTA CTCTAGAAAT TCTGAGGATA TGTCCGAAAG ATACCCTGAT TTGATTTCTA TCATGAAAGA TTTCATAAAG ACACAAGAGG GTCAGGCTCC ATCCATGATA TTGGACTGTG AGGCTGTGGC CTGGGACAGA GTTGCTAACA AGATTTTGCC CTTCCAAGTA TTATCTACAC GTAAACGTAA AGATGTTGAT GAAAAAGATA TTACTGTACA TATTTGTTTG TTTGCATTCG ACATTCTTTA TTTTGATAAT GAACCTTTAA TTACAAAGTC CTTGAAAGAA AGAAGACAGG TCATGGAAGA GAACTTGACG CCAATGGACG GCAAGTTCCA ATTTGCAACT GCAAAAAACT CCTCTAACCT TGATGAATTA CAGCAATTCC TTGATCAATC TGTTAAAGAC TCTTGTGAAG GCTTAATGGT GAAGATGCTT AATGGTAAGG AATCTTACTA CGAGCCTTCC AAGAGATCTA GAAATTGGTT GAAACTTAAG AAAGATTACT TGGCGGGAGT TGGCGATTCG TTAGATTTGG TCGTTATTGG AGCTTATATT GGAAGAGGCA AACGTACTGG AAATTATGGT GGTTTCTTAT TGGCTTCTTA TAACCAGGAT ACAGGCGAAT ATGAAACGAC TTGTAAGATT GGTACTGGGT TTTCTGACGA AGATTTGGCT TCTCTTCATA CGAAATTGAA GCCTACTGAA ATTTCTGTCC CCAAGCCGTA TTATGTTTAT GATACCACGA ATTCCAACGC AAAGCCTGAT GTCTGGTTCG AACCAACCAC GATCTTTGAG GTCTTGACAG CAGACTTGTC GTTGAGTCCA ATCTACAAGG CAGCTCATCA GGAATACGGA AAGGGTATTT CCTTGAGATT TCCTCGTTTC CTTAGAATCA GAGACGATAA AGGCATTGAG GACGCTACAA GTTCAACACA AGTGTCTGAA TTCTACGAGA GGCAGGCCAG TGTTAATTAG
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Protein sequence | MAPRQQSIGR FFGSAMSVDS LLSQTVNKSP KNQKSESLTD EQNKREAFQV SQQESEKDQE QKPDTDPSES EPEKDKTEEI KEASELIKLS EKEHEKHVGE KLSAKIPYSK LTDVLDKIEA ESSRLKITAI VSEFFLEILK QSTVDKLVKI VYLFINRLGP DYEPDLELGL GETILIKAIS ECYGRPSTKI KKDYQEVGDL GLVAQKSRSG QPTMFKPAPL DVDQVFENLT KIAKSTGKDS QAKKISLINK MLTACNAKSS EAKFLIRSLE GKLRIGLAEK TVLIGLAQAF VNYEAKDSKR INPEKLTQSE DVVREAFSQI PNYEILIRNA YEYGIFNLLD HCQLTPGIPL KPMLAKPTKS ISEVLDRFQG EEFTCEYKYD GERAQVHLLH DGTVRIYSRN SEDMSERYPD LISIMKDFIK TQEGQAPSMI LDCEAVAWDR VANKILPFQV LSTRKRKDVD EKDITVHICL FAFDILYFDN EPLITKSLKE RRQVMEENLT PMDGKFQFAT AKNSSNLDEL QQFLDQSVKD SCEGLMVKML NGKESYYEPS KRSRNWLKLK KDYLAGVGDS LDLVVIGAYI GRGKRTGNYG GFLLASYNQD TGEYETTCKI GTGFSDEDLA SLHTKLKPTE ISVPKPYYVY DTTNSNAKPD VWFEPTTIFE VLTADLSLSP IYKAAHQEYG KGISLRFPRF LRIRDDKGIE DATSSTQVSE FYERQASVN
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