Gene PICST_55603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_55603 
SymbolDED1 
ID4837080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp2034677 
End bp2036527 
Gene Length1851 bp 
Protein Length616 aa 
Translation table12 
GC content51% 
IMG OID640388395 
ProductATP-dependent RNA helicase of DEAD box family 
Protein accessionXP_001383156 
Protein GI150864373 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GGCGGCAACG GCTCGCGTAG ATCGCAGTAC GTACCTCCCC ATCTCAGAAA CAGAAACACG 
TCTTCTGGCT CTGGCTTTGG CGGCAACGGT GGCGGCCGTG GCCGTGGCAG TTTTGGCGGC
AGCAACTACA ACAATGCTGG CAACCGCGAC AACACGATCT TCGGAGGCAG CGGACGCAGC
AGAGACCGTG GCTTTGGTGG AAGAGGAGGA TTCAGATCCA ACCAACTGCG TCCCGGTGTT
GGACGTTGGG TCGATGGTAA ACACGAGCCT TCTGCCCGTA ACGAACGTAT CGAACTCGAG
TTGTTTGGAA CCGCTGAGGA CACCAGCTTC CAGTCGTCGG GTATTAACTT CGACAACTAC
GACGATATCC CTGTTGAAGC CTCCGGTGAT GGCGTTCCTG ACCCAATCAC CTCCTTCACT
GCTCCACCTT TAGACGAGCT CTTGGTGGAA AACATTACCA TGTCCAGATT CACTAAACCT
ACCCCAGTGC AAAAGTATTC CGTTCCTATC GTTGCTGGTG GCAGAGATTT GATGGCCTGT
GCCCAGACCG GTTCCGGTAA GACTGGTGGT TTCTTGTTCC CCGTCTTGTC TGAATCATAC
ATCAACGGAC CAGCACCTAT TGCCGAAAGT ACTGGTGCCT TTTCTTCTCA CAAAGTTCAT
CCTACCATTT TGGTGATGGC TCCTACCAGA GAATTGGTCT CCCAGATCTA CGATGAGGCA
AAGAAATTCG CTTACAGATC GTGGGTCAAG CCTGCCGTCG TCTACGGTGG TGCTGACATT
GGCCAGCAGA TCAGAAACTT GGACAAGGGC TGTGATCTTT TAGTAGCCAC TCCAGGTCGT
CTTAAGGACT TGTTGGAAAG AGGCCGTGTG TCTTTGGCCA ACATTAAGTA CTTGGTTCTT
GACGAAGCCG ACAGAATGTT GGATATGGGT TTCGAACCTC AAATCAGACA TATTGTCCAG
GAATGTGACA TGCCAGATGT CCAAGACAGA CAAACATTGA TGTTCTCTGC CACTTTCCCT
ACTGACATCC AGATGCTTGC CCGTGATTTC TTGAAGGACT ACATCTTTTT ATCTGTCGGT
AGAGTCGGTT CCACTTCCGA AAACATTACT CAGAAGATTT TATACGTTGA AGACGAAGAA
AAGAAGTCCG TCTTGTTGGA CTTGTTGTCT GCTGGCGACG CTGGTTTGAC AATCATCTTC
ACTGAAACCA AGAGAATGGC CGACAACTTG GCAGATTTCT TGTACGACCA GGGCTTCCCA
GCCACCGCCA TTCACGGTGA CAGATCGCAG TACGAAAGAG AAAAGGCTTT GGCCGCCTTC
AAGAGCGGTG CTGCTCCTAT TTTGGTGGCT ACTGCCGTTG CTGCTAGAGG TTTGGATATT
CCAAATGTCG CCCATGTCAT CAACTATGAC TTACCTAGTG ACATCGATGA CTATGTCCAC
AGAATTGGTC GTACCGGTCG TGCTGGTAAC GTTGGTATCG CTACCGCATT CTTTAACAGA
AACAACAAGA ACGTTGTTAA GGGCTTGATT GACTTGTTGA GTGAAGCCAA CCAAGAAGTT
CCTGATTTCT TGGCCAAAAT CGGCAGAGAA TCCGCTTTTG GAGGTAAGAC TGGCGGTATG
CGCGGCGGTC GTGGTGGCTC TAGAGGTCCA GTTAGAGACT TCAGAAGAGG CGCCAGTGGT
GGCTCTTCCG GTGGTTGGGG CAACTCCAGT GGCAGTGCCG GTGGCTGGGG TGCTGCTCCA
AGTGGCGGCA ATTCCTACAA CTCTGGCTAC AGCTCTCGTT CCAACTCGTA CAACAGCTCT
TATGGATCCT CCGGTTACGG TAACCCAACC TCCACCAACT CGTGGTGGTA A
 
Protein sequence
GGNGSRRSQY VPPHLRNRNT SSGSGFGGNG GGRGRGSFGG SNYNNAGNRD NTIFGGSGRS 
RDRGFGGRGG FRSNQSRPGV GRWVDGKHEP SARNERIELE LFGTAEDTSF QSSGINFDNY
DDIPVEASGD GVPDPITSFT APPLDELLVE NITMSRFTKP TPVQKYSVPI VAGGRDLMAC
AQTGSGKTGG FLFPVLSESY INGPAPIAES TGAFSSHKVH PTILVMAPTR ELVSQIYDEA
KKFAYRSWVK PAVVYGGADI GQQIRNLDKG CDLLVATPGR LKDLLERGRV SLANIKYLVL
DEADRMLDMG FEPQIRHIVQ ECDMPDVQDR QTLMFSATFP TDIQMLARDF LKDYIFLSVG
RVGSTSENIT QKILYVEDEE KKSVLLDLLS AGDAGLTIIF TETKRMADNL ADFLYDQGFP
ATAIHGDRSQ YEREKALAAF KSGAAPILVA TAVAARGLDI PNVAHVINYD LPSDIDDYVH
RIGRTGRAGN VGIATAFFNR NNKNVVKGLI DLLSEANQEV PDFLAKIGRE SAFGGKTGGM
RGGRGGSRGP VRDFRRGASG GSSGGWGNSS GSAGGWGAAP SGGNSYNSGY SSRSNSYNSS
YGSSGYGNPT STNSWW