Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_55603 |
Symbol | DED1 |
ID | 4837080 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009042 |
Strand | - |
Start bp | 2034677 |
End bp | 2036527 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 12 |
GC content | 51% |
IMG OID | 640388395 |
Product | ATP-dependent RNA helicase of DEAD box family |
Protein accession | XP_001383156 |
Protein GI | 150864373 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GGCGGCAACG GCTCGCGTAG ATCGCAGTAC GTACCTCCCC ATCTCAGAAA CAGAAACACG TCTTCTGGCT CTGGCTTTGG CGGCAACGGT GGCGGCCGTG GCCGTGGCAG TTTTGGCGGC AGCAACTACA ACAATGCTGG CAACCGCGAC AACACGATCT TCGGAGGCAG CGGACGCAGC AGAGACCGTG GCTTTGGTGG AAGAGGAGGA TTCAGATCCA ACCAACTGCG TCCCGGTGTT GGACGTTGGG TCGATGGTAA ACACGAGCCT TCTGCCCGTA ACGAACGTAT CGAACTCGAG TTGTTTGGAA CCGCTGAGGA CACCAGCTTC CAGTCGTCGG GTATTAACTT CGACAACTAC GACGATATCC CTGTTGAAGC CTCCGGTGAT GGCGTTCCTG ACCCAATCAC CTCCTTCACT GCTCCACCTT TAGACGAGCT CTTGGTGGAA AACATTACCA TGTCCAGATT CACTAAACCT ACCCCAGTGC AAAAGTATTC CGTTCCTATC GTTGCTGGTG GCAGAGATTT GATGGCCTGT GCCCAGACCG GTTCCGGTAA GACTGGTGGT TTCTTGTTCC CCGTCTTGTC TGAATCATAC ATCAACGGAC CAGCACCTAT TGCCGAAAGT ACTGGTGCCT TTTCTTCTCA CAAAGTTCAT CCTACCATTT TGGTGATGGC TCCTACCAGA GAATTGGTCT CCCAGATCTA CGATGAGGCA AAGAAATTCG CTTACAGATC GTGGGTCAAG CCTGCCGTCG TCTACGGTGG TGCTGACATT GGCCAGCAGA TCAGAAACTT GGACAAGGGC TGTGATCTTT TAGTAGCCAC TCCAGGTCGT CTTAAGGACT TGTTGGAAAG AGGCCGTGTG TCTTTGGCCA ACATTAAGTA CTTGGTTCTT GACGAAGCCG ACAGAATGTT GGATATGGGT TTCGAACCTC AAATCAGACA TATTGTCCAG GAATGTGACA TGCCAGATGT CCAAGACAGA CAAACATTGA TGTTCTCTGC CACTTTCCCT ACTGACATCC AGATGCTTGC CCGTGATTTC TTGAAGGACT ACATCTTTTT ATCTGTCGGT AGAGTCGGTT CCACTTCCGA AAACATTACT CAGAAGATTT TATACGTTGA AGACGAAGAA AAGAAGTCCG TCTTGTTGGA CTTGTTGTCT GCTGGCGACG CTGGTTTGAC AATCATCTTC ACTGAAACCA AGAGAATGGC CGACAACTTG GCAGATTTCT TGTACGACCA GGGCTTCCCA GCCACCGCCA TTCACGGTGA CAGATCGCAG TACGAAAGAG AAAAGGCTTT GGCCGCCTTC AAGAGCGGTG CTGCTCCTAT TTTGGTGGCT ACTGCCGTTG CTGCTAGAGG TTTGGATATT CCAAATGTCG CCCATGTCAT CAACTATGAC TTACCTAGTG ACATCGATGA CTATGTCCAC AGAATTGGTC GTACCGGTCG TGCTGGTAAC GTTGGTATCG CTACCGCATT CTTTAACAGA AACAACAAGA ACGTTGTTAA GGGCTTGATT GACTTGTTGA GTGAAGCCAA CCAAGAAGTT CCTGATTTCT TGGCCAAAAT CGGCAGAGAA TCCGCTTTTG GAGGTAAGAC TGGCGGTATG CGCGGCGGTC GTGGTGGCTC TAGAGGTCCA GTTAGAGACT TCAGAAGAGG CGCCAGTGGT GGCTCTTCCG GTGGTTGGGG CAACTCCAGT GGCAGTGCCG GTGGCTGGGG TGCTGCTCCA AGTGGCGGCA ATTCCTACAA CTCTGGCTAC AGCTCTCGTT CCAACTCGTA CAACAGCTCT TATGGATCCT CCGGTTACGG TAACCCAACC TCCACCAACT CGTGGTGGTA A
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Protein sequence | GGNGSRRSQY VPPHLRNRNT SSGSGFGGNG GGRGRGSFGG SNYNNAGNRD NTIFGGSGRS RDRGFGGRGG FRSNQSRPGV GRWVDGKHEP SARNERIELE LFGTAEDTSF QSSGINFDNY DDIPVEASGD GVPDPITSFT APPLDELLVE NITMSRFTKP TPVQKYSVPI VAGGRDLMAC AQTGSGKTGG FLFPVLSESY INGPAPIAES TGAFSSHKVH PTILVMAPTR ELVSQIYDEA KKFAYRSWVK PAVVYGGADI GQQIRNLDKG CDLLVATPGR LKDLLERGRV SLANIKYLVL DEADRMLDMG FEPQIRHIVQ ECDMPDVQDR QTLMFSATFP TDIQMLARDF LKDYIFLSVG RVGSTSENIT QKILYVEDEE KKSVLLDLLS AGDAGLTIIF TETKRMADNL ADFLYDQGFP ATAIHGDRSQ YEREKALAAF KSGAAPILVA TAVAARGLDI PNVAHVINYD LPSDIDDYVH RIGRTGRAGN VGIATAFFNR NNKNVVKGLI DLLSEANQEV PDFLAKIGRE SAFGGKTGGM RGGRGGSRGP VRDFRRGASG GSSGGWGNSS GSAGGWGAAP SGGNSYNSGY SSRSNSYNSS YGSSGYGNPT STNSWW
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