Gene PICST_55030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_55030 
SymbolPRI1 
ID4837106 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp2665669 
End bp2666994 
Gene Length1326 bp 
Protein Length437 aa 
Translation table12 
GC content41% 
IMG OID640388421 
Productp48 polypeptide of DNA primase 
Protein accessionXP_001382746 
Protein GI150864059 
COG category[L] Replication, recombination and repair 
COG ID[COG1467] Eukaryotic-type DNA primase, catalytic (small) subunit 
TIGRFAM ID[TIGR00335] DNA primase, eukaryotic-type, small subunit, putative 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTTTT TCTACAAGAG ACTATTACCT TTCAAGCACA TTTTCCAATG GTTGAGCCAT 
TCACCCAAGC CAACAAAAGA CTTCACCATG AGAGAATTTG CCTATGAACA TCGTTCTGGA
GTTTACCAGA GATATATCTC ATATGACAAT GCTGATGATT TCAAGAACCA TGTAGTCAAC
TCCAACCCTA CACGTTTCGA AGTGGGAGCA GTATATTCGG TCAATCCCAA GGAAAGGAAA
TTTCTTCCTA AGCTGGCATA CAAACCTGTT TCCAAAGAAT TGGTTTTTGA TATCGATATG
ACAGATTACG ATGATATTAG AACTTGTTGC CAGGGAACGG ATATCTGTAC CAAATGCTGG
AGATTCATTC AGGTCGCTGC TAAAATCATT GACAGAGCAT TGAGAGAGGA CTTTGGATTC
GAGCACTTGA TATGGGTATT CTCGGGGAGA AGAGGGGCAC ATTGTTGGGT GTCTGATCCA
AGAGCCAGGA ATTTGGAAGA AGGTACGAGG AGAGCGATTG TAGAGTATAT GGATGTGTTG
GGTGCAAAAC AAACCAAGTC TTCCAACAGA AAATTGCTAA ACTTGAAGAA ACCCTTCCAT
CCACACGTAG AAAGATCGTT CAATATCGTC AAACAAGAAT TTGCAAAGAT CATCTTGGAA
GAACAAGAAC CTTGGTTGAC GACTCCTTCG CTAGCAGATG ACGACAAGGC TTGGACTCAG
ACGGAAGAAC TTTTGTCATT CATCCCAGAC AATACATTGC AGTCAGAATT AAGAGCCAAG
TGGAAAAACC TGCTTTCATT ATCTACGTCC AGATCTAAGT GGGAAGACAT CAACGTACTT
GCAAAGACTT CTTTAAAGTC TCAAGTTCAG GTCAGCCAAT TGAACGAGGC CAAGAAGGAA
ATCATATTAT ACTACATGTA CCCAAGACTA GACATAGAAG TGTCGCGTCA AGTTATCCAC
TTGTTAAAGT CCCCATTCTG TATCCATCCA GGAACTGGTA ATGTCTGTGT TCCCTTTGAT
CCTAGACGCA ATATTTCAAT GAACGCCGAA GATGATGCCT ACGGATTCAA CCCAACCACT
GCTCCAAACT TGTTGCAATT GCAGCGTGAA TTGGATATTT GGGAAACTAA GAGGGTGAAT
AGAGAGTCTA GCCAACCAGC TGGCGAATCC GGAGATGAAG TAGAAACTAG AGTTCTTGAT
TACGAAAAGA CAAGTTTAAA GCCATACGTA GATTACTTTG CGAAATTTGT TCTGGATTTA
ACCAAAGCTG AACTTAAAGG TATACTGGCT AAGAGAGATC TTGAAGATAA ACTGTTGGAA
TTCTAG
 
Protein sequence
MIFFYKRLLP FKHIFQWLSH SPKPTKDFTM REFAYEHRSG VYQRYISYDN ADDFKNHVVN 
SNPTRFEVGA VYSVNPKERK FLPKSAYKPV SKELVFDIDM TDYDDIRTCC QGTDICTKCW
RFIQVAAKII DRALREDFGF EHLIWVFSGR RGAHCWVSDP RARNLEEGTR RAIVEYMDVL
GAKQTKKLLN LKKPFHPHVE RSFNIVKQEF AKIILEEQEP WLTTPSLADD DKAWTQTEEL
LSFIPDNTLQ SELRAKWKNS LSLSTSRSKW EDINVLAKTS LKSQVQVSQL NEAKKEIILY
YMYPRLDIEV SRQVIHLLKS PFCIHPGTGN VCVPFDPRRN ISMNAEDDAY GFNPTTAPNL
LQLQRELDIW ETKRVNRESS QPAGESGDEV ETRVLDYEKT SLKPYVDYFA KFVSDLTKAE
LKGISAKRDL EDKSLEF