| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_41967 |
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| Symbol | |
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| ID | 4837468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | + |
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| Start bp | 2146974 |
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| End bp | 2147708 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640388783 |
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| Product | predicted protein |
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| Protein accession | XP_001382637 |
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| Protein GI | 150863976 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5073] Vacuolar import and degradation protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00407294 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0529872 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTCGATGCAT ACAACTACCA GGTAAGAAAC CACAATAAGG TACCTCGGTT CATGAACTCT
TACCTTCGAT CCAACGCGGT CTATGTAGGC GAACAACAGT CGGGAAAGTC ACGTTTCCAC
ATCAAGGTAG AGTTGAAAAG CATCGATCTC ATGAACCTGG TAGTCACGGG ATTTCTCCAG
ATTTCGGGAC TCACTGAAGA CCATTCTGAA ATCATTACGT GTTTCAAAGG TGAAATCATC
AATAACCCCA TGAATACGTA TTTGTGGCAG GATCGAGAGA AGAAGTCTCC CAACGACTAC
AAGGTGAGAA ATTTTTCGTT CATCACAGAG AACAAGCAGT GGGGCTCTTT TATCAAGAAC
GACTTCGAAC ACTGGAAAAA ACTCACAGGA TCATCTACTC TAAGTGACGA ACAGTTCCAG
CAGCGCTTGG AACGTATTCT GCGGGGCGAA GAAGACCAAC AGTACTTGTA TATGCGGTGG
AAGGAAGAGT TCTTGTTGCC AGATTCTCGA ATCAAGCAGA TACTGGGAGC TTCCTTCGAA
GGTTTCTATT ACATTGTCAT GAATATCGGC TCGGAAGACC ATGTCAACTA CTCGGCTCCA
TATGTGCATT CCACCACTAT AAGTCCCGGC TCTATCAGTG GCTTGTACTA CCACAAATCG
TCAGAAAAGT TTCAGTCGTT GAGTCTTCGG TATGTTGAGG ATCGGGGTGT ATCCAATACT
TTTCAGTTCT ACTAA
|
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| Protein sequence | FDAYNYQVRN HNKVPRFMNS YLRSNAVYVG EQQSGKSRFH IKVELKSIDL MNSVVTGFLQ
ISGLTEDHSE IITCFKGEII NNPMNTYLWQ DREKKSPNDY KVRNFSFITE NKQWGSFIKN
DFEHWKKLTG SSTLSDEQFQ QRLERISRGE EDQQYLYMRW KEEFLLPDSR IKQISGASFE
GFYYIVMNIG SEDHVNYSAP YVHSTTISPG SISGLYYHKS SEKFQSLSLR YVEDRGVSNT
FQFY
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