Gene PICST_12827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_12827 
Symbol 
ID4837533 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp2640309 
End bp2641082 
Gene Length774 bp 
Protein Length258 aa 
Translation table12 
GC content36% 
IMG OID640388848 
Productpredicted protein 
Protein accessionXP_001382739 
Protein GI150864055 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TCCTCGTCTT CTCCTATCAA CAGAAAGGAA AACTTGTCTC CAAATCATTT CAAGTACTAT 
ACCAACCACT TGAACAAGAC ACAATTCAAC CTTATCTTGA TTAATTGTTC AATCAACTTA
ATGAAGACTT TATATAAGGA CTCTGTCGAC GAGAAAGACT TGCGATTCTT CATTATTGAA
GTCTTGAGAA GATCAAAGAC TTCTATCCAG TCTTTGCAAT TGGCATGTTA TTACATGTTT
AAACTTGTAA AGGACGAGAA AGATGTCGCA TCTGATGTCC ATTTAAAAGA TTACAAAAAA
TTATTCTTGG GTTTGGTCAT TCTTTCTCTG AAATTCAACC AGGATTGCAA TTATTCGTTC
AAAACTTGGT TAAAGATCTG TGGCATCAAG GAAGACGATC AAAAGAGTAA TTTGAAGACT
CTTAGAGAAG TCGAAATTAA GTGCTTAGGC TTGTTGAACT ACGAGCTTTA CCTCAACGGT
TTGGCATACG AAAACTGGTG CAACATTCTC ATCATATATG GCTATGACTT TATCAGTTAC
CAAATTGTCA ACAGCCGCAA CCATGACGAG AATGAAATTC ACTGGGAATC CAACGATGCT
TCCATTTCCA ACAAGTTGAA AAAATGGAAG GGATTCTTTG GTCAACTTTC CATCAACAAT
TTGAGTGTTG TTAAAATCAA TTTCAACAAC TATTATGCAA ATCAGATGGA TAGGAAGATC
TTCATTGATG CCAAGAAGGC ACCTGTGTCT CTCTTTTCTT CTGGATCTAG AAAG
 
Protein sequence
SSSSPINRKE NLSPNHFKYY TNHLNKTQFN LILINCSINL MKTLYKDSVD EKDLRFFIIE 
VLRRSKTSIQ SLQLACYYMF KLVKDEKDVA SDVHLKDYKK LFLGLVILSS KFNQDCNYSF
KTWLKICGIK EDDQKSNLKT LREVEIKCLG LLNYELYLNG LAYENWCNIL IIYGYDFISY
QIVNSRNHDE NEIHWESNDA SISNKLKKWK GFFGQLSINN LSVVKINFNN YYANQMDRKI
FIDAKKAPVS LFSSGSRK