Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17029_4185 |
Symbol | |
ID | 4894964 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17029 |
Kingdom | Bacteria |
Replicon accession | NC_009040 |
Strand | + |
Start bp | 119508 |
End bp | 122597 |
Gene Length | 3090 bp |
Protein Length | 1029 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640110576 |
Product | Na-Ca exchanger/integrin-beta4 |
Protein accession | YP_001041888 |
Protein GI | 126464912 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 53 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 87 |
Fosmid unclonability p-value | 0.610735 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCATTC TTCCGACCTT CAGCGTCACC AGCACCCCCG TCGTCGAGGG CAATTACCTC ACCTACACCA TCCGCCTCTC CGAGCCCGCC CCCGATGCGG TGAGCGTGGA TTACCTGTTC CGCTCCGGCA CCGCGCTGCT CGACGAGGAT TTCTATTCCA CCGCCCCCTC GGGCACGCTC GTCTTCGCCC CCGGCGAGAC GGTGCTGACG CTCCAGATCC GGTCCTACAA CGACAGGCTC GACGAGACCG ACGAGAGCTT CTTTCTCGAA CTGAGCGATC CGCAGGGCGC GCAGTTCGGC GCCAACATCT CGACCCTCGT CACCGCGGGC TGGGTGATCG ACGACGATGG CGTGGGGGTG AACCGGGCGC TGGCCGTCTC GAACCCCGTG GTGACCGAGG CCGCGGGCGG GCAGGCGCTC TTCACCCTCA CGCTGTCGGA GGCCTTCACC ACCGACCGCA GCTTCACCTA CACGACCCAT GACGGCTCGG CCCGGGCGGG CGCGGATTAT GTCGCCCGCA CCGGCACCGT CACCTTCCTC GCCGGCCAGA CCGAGGCCAC GGTCGCGGTC AATCTGATCA ACGATGGCGC GGTCGAGGCG GGCGAGACCT TCGGCCTCGC CGTCACCGGC GCCCATGGCG TGCCCGCCGC CACCGGCACG GCCGAGATCC TGAACGACGA CGGGCCGGTG CCGGTGATCT CGGTCGAGGG CGACCGGGTG GTCGAGGGCA GCTACCTCAC CTATACGATC CGGCTCTCCG AGCCCGCGAC CGACGCGGTG AGCGTGGATT ACCAGTTCCG CTCGGGCACC GCGCTGCTCG ACGAGGATTT CTATTCCACC GCCCCCTCGG GCACGCTCGT CTTCGCCCCC GGCGAGACGG TGCAGACCCT CCGCATCCGC TCCTACAACG ACAGTCTCGA CGAGATCGAC GAGAGCTTCT TTCTCGAGCT GAGCGAACCG CAGGGCGCGC GGTTCGGCGC CAACATCTCG ACCCTCATCA CGACGGGCTG GGTGATCGAC AATGACGGCG TGGGGGTGAA CCGGGCGCTG GCCGTCTCGA ACCCCGTGGT GACCGAGGCC GCGGGCGGGC AGGCGCTCTT CACCCTCACG CTGTCGGAGG CCTTCACCAC CGACCGCAGC TTCACCTACA CGACCCATGA CGGGTCGGCC CGGGCGGGCG CGGATTATGT CGCCCGCACC GGCACCGTCA CCTTCCTCGC CGGCCAGACC GAGGCCACGG TCGCGGTCAA TCTGATCAAC GATGGCGCCG TCGAGGCGGG CGAGACCTTC GGCCTCGCGG TCACCGGCGC CCATGGTGTG CCCGCCGCCA CCGGCACGGC CGAGATCCTG AATGACGACG GGGCGGTGCC GGTGATCTCG GTCGAAGGCG ACCGGGTGGT CGAGGGCAGC TACCTCACCT ATACGATCCG GCTCTCGGAA CCCGCGACCG ACGCGGTGAG CGTGGATTAC CAGTTCCGCT CGGGCACCGC GCTGCTCGAC GAGGATTTCT ATTCCACCGC CCCCTCGGGC ACGCTCACCT TCGCGCCCGG CGAGACGGTG CAGACCCTCC GCATCCGCTC CTACAACGAC AGTCTCGACG AGATCGACGA GAGCTTCTTT CTCGATCTGA GCGATCCCCG CGGCGCGCAG TTCGGCGGCG GCAACCGCGC GCTGTCCACC GGCGGCTGGG TGCTCGACAA TGACGGGGTG GGGCTGAACC GCTCGGTCTC GGTCGGCCAT GCCACGCTGC AGGAAGGGCC CGGCGGCCGG GTCGCGGTCT TCGTGGTCGA GCTTTCGGCC GCCTCGGCCG AGCGGATCGC CATCGGCTTC CAGACCCTCG CCGGGACGGC CCGCCCGGGC AGCGACTTCG CCGCCCGGTC GGGCGAGGTG GTCTTCCTGC CCGGCCAGAC CCGGGCCGAA ATTCTCATCC CCATCCTCGA CGATCTCGTG CTCGAGAATA CCGAGAGCTT CAGCCTGCGC CTCGTGCCGC CCTTCCCCAG CGCCATCTCC TCGGCCACGC CGGTGCCGGT GGGGGTGGCC ACCCTCCTCG ACGGCACGCT CCGCGGCTCG GGCGGCAACG ACCGGCTGAT CGGCACGGCC AATGCCGAGC GGATCGAGGG GTTCGGCGGC AACGACCGGA TCGAGGGCCG GGGCGGCAAT GACCTTCTGT CGGGCGGCGC GGGCAACGAC CTGCTCGACG GCGGCGGCGG ACGCGACCGG ATGGTGGGGG GCACGGGCAA CGACCGCTAT ATCGTCAACC ATGCCGGGGA CAGCACGATC GAGCTGGCCG GGGGTGGCAT CGACACGGTG CAGAGCAGCC TCTCCTGGAC TCTGGCCGCC AATGTCGAGC GGCTGGTGCT GACCGGCGGG GCTGCCCTGT CGGGCACCGG CAACGGGCTT GCGAACCTGC TCACCGGCAA TGGCGGCGCG AACCGGCTGC AGGGGCTTGC CGGCAACGAC ACGCTGAACG GCGGCGGCGG GCGCGACGTC ATGATCGGCG GGACGGGCAA CGACACCTAC ATCACCGATG GCGGCGACAC GATCGTGGAG CGCGCGGGCC AGGGGGTGGA TGTGGTGCGC GCCTCGGTCA GCTACACGCT GGGCGCCCAG CTCGAGACGC TGGTGCTGAC GGGCACGGCG AACCTTTCGG GGACCGGCAA TGGGCTTTCG AACCTGCTGA TCGGCAATGG CGGCGCGAAC CGGCTGAGCG GCGGCGCCGG CAACGACACG CTGAGCGGCG GCGGCGGGGC GGATCTGCTG ATCGGCGGCG CCGGGCGCGA CAGCTTTGTC TTCAACACCC GCCCCGGGCC CGGCGCGATC GACCGGATCG CGGATTTCAA CGTGGCCGAC GACGTGATCC ATCTGGAAAA TGCGGTGTTC CGCGGCCTTC CGGCGGGGGC GCTGCGCGGG GCGGCCTTTG CCTCCAACCT CTCGGGACAG GCCACCGATG CGGCCGACCG GATCCTCTAT GAGCGCGACA CCGGGGCGCT CTGGTTCGAT GCCGACGGCA CCGGAGGGGG CGCGCGGGTG CAGATCGCGA CCCTCTCGGC GGGGCTCGGC CTGACGGCCG CGGATTTCTT CGTGATCTGA
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Protein sequence | MAILPTFSVT STPVVEGNYL TYTIRLSEPA PDAVSVDYLF RSGTALLDED FYSTAPSGTL VFAPGETVLT LQIRSYNDRL DETDESFFLE LSDPQGAQFG ANISTLVTAG WVIDDDGVGV NRALAVSNPV VTEAAGGQAL FTLTLSEAFT TDRSFTYTTH DGSARAGADY VARTGTVTFL AGQTEATVAV NLINDGAVEA GETFGLAVTG AHGVPAATGT AEILNDDGPV PVISVEGDRV VEGSYLTYTI RLSEPATDAV SVDYQFRSGT ALLDEDFYST APSGTLVFAP GETVQTLRIR SYNDSLDEID ESFFLELSEP QGARFGANIS TLITTGWVID NDGVGVNRAL AVSNPVVTEA AGGQALFTLT LSEAFTTDRS FTYTTHDGSA RAGADYVART GTVTFLAGQT EATVAVNLIN DGAVEAGETF GLAVTGAHGV PAATGTAEIL NDDGAVPVIS VEGDRVVEGS YLTYTIRLSE PATDAVSVDY QFRSGTALLD EDFYSTAPSG TLTFAPGETV QTLRIRSYND SLDEIDESFF LDLSDPRGAQ FGGGNRALST GGWVLDNDGV GLNRSVSVGH ATLQEGPGGR VAVFVVELSA ASAERIAIGF QTLAGTARPG SDFAARSGEV VFLPGQTRAE ILIPILDDLV LENTESFSLR LVPPFPSAIS SATPVPVGVA TLLDGTLRGS GGNDRLIGTA NAERIEGFGG NDRIEGRGGN DLLSGGAGND LLDGGGGRDR MVGGTGNDRY IVNHAGDSTI ELAGGGIDTV QSSLSWTLAA NVERLVLTGG AALSGTGNGL ANLLTGNGGA NRLQGLAGND TLNGGGGRDV MIGGTGNDTY ITDGGDTIVE RAGQGVDVVR ASVSYTLGAQ LETLVLTGTA NLSGTGNGLS NLLIGNGGAN RLSGGAGNDT LSGGGGADLL IGGAGRDSFV FNTRPGPGAI DRIADFNVAD DVIHLENAVF RGLPAGALRG AAFASNLSGQ ATDAADRILY ERDTGALWFD ADGTGGGARV QIATLSAGLG LTAADFFVI
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