Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rsph17029_4177 |
Symbol | |
ID | 4895048 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides ATCC 17029 |
Kingdom | Bacteria |
Replicon accession | NC_009040 |
Strand | - |
Start bp | 112492 |
End bp | 113118 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 640110568 |
Product | lysine exporter protein LysE/YggA |
Protein accession | YP_001041880 |
Protein GI | 126464904 |
COG category | [R] General function prediction only |
COG ID | [COG1279] Lysine efflux permease |
TIGRFAM ID | [TIGR00948] L-lysine exporter |
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Plasmid Coverage information |
Num covering plasmid clones | 89 |
Plasmid unclonability p-value | 0.00817144 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 88 |
Fosmid unclonability p-value | 0.249821 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGACC TCGCCCCCTT CCTCACCGGC TTCGGCCTCT CCCTGGGCCT GATCGTCGCC ATCGGCGCGC AGAATGCCTT CGTGCTGCGG CAGGGGCTTC GGCGCGAACA TGTGGGCGCG GTCGTGGCCT TCTGCGCGCT GGCCGATCTG GCGCTGATCG CGGCCGGGGT GGCGGGTCTC GGAACGGTCC TGGGGCGCGC GCCCGGGCTG GTGACGGGCC TGTCGCTGGG CGGCGCGGCC TTCCTCGGCT GGTACGGGCT TTCGGCCCTG CGCCGGGCGC TGCATCCCGC CCGGCTGGTC GCGGAGACCG GAGGGGAGGC GCTGACGCGG GCGGGAGCGC TGGCCCGCGT GGCCGCCTTC ACCTTCCTCA ACCCCCATGT CTATCTCGAC ACCGTGCTTC TGGTGGGATC GGTCGGGGCC GCGCAGCCCA CGGGCGCGCA GGGGCCCTTC GTGGCCGGCG CGGGCCTGGC CAGTCTGGTC TGGTTCGTGG CCCTGGGCTT CGGGGCCCGC CTGCTCGCGC CGCTCTTCGC CCGGCCGCGC GCCTGGCGGG TGCTTGACCT GCTGGTGGGC GCCGTCATGA TCCTGCTGGC CGGGGGCCTT CTGACCCGCG TTCTCTCCAC CGCCTGA
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Protein sequence | MTDLAPFLTG FGLSLGLIVA IGAQNAFVLR QGLRREHVGA VVAFCALADL ALIAAGVAGL GTVLGRAPGL VTGLSLGGAA FLGWYGLSAL RRALHPARLV AETGGEALTR AGALARVAAF TFLNPHVYLD TVLLVGSVGA AQPTGAQGPF VAGAGLASLV WFVALGFGAR LLAPLFARPR AWRVLDLLVG AVMILLAGGL LTRVLSTA
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