| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_4425 |
|---|
| Symbol | |
|---|
| ID | 4841320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009036 |
|---|
| Strand | - |
|---|
| Start bp | 41541 |
|---|
| End bp | 43664 |
|---|
| Gene Length | 2124 bp |
|---|
| Protein Length | 707 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640110417 |
|---|
| Product | DNA topoisomerase III |
|---|
| Protein accession | YP_001041729 |
|---|
| Protein GI | 126090274 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 77 |
|---|
| Plasmid unclonability p-value | 0.669794 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.110888 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTCT TTTTATGCGA AAAACCGTCA CAGGCAAAAG ATATTGCGAG TGTCCTTGGT
TGTAAGCGTG GAGATGGTGT TTTTACTGGT GACGGTATTG CGGTGACGTT TTGCGTTGGT
CATGTTTTAC AACAAGCAGA ACCTGAAAAC TATAACCCTG ATTTTGAGAC GTGGAATATC
GTTGATTTAC CCATTATTCC AACAGTTTGG AAAATGTTAG TCAGTCCAAA AACGAAAGCG
CAATTTGCGA TTGTAAAAAA GCAATTGGCC AAGGCCACTG AGGTTATTAT TGCAACGGAT
GCAGACCGCG AAGGTGAAGT TATCGCCCGT GAGGTGCTTG AATACGTTAA CTATAAAGGG
CCCATTCAAC GGTTGTGGCT AAGTGCGTTG GATGACGCCA GCATTAAGAA AGCGTTGGCG
TCTTTGCGAC CTAACCATGA AACTGCCAAG CTTTACGATG CAGGGTTAGG CCGAAGTCGG
GGAGACTGGC TTATTGGAAT GAATATGACG CGATTATGCA CCTTACTGAG CCGTGAATAC
GGTTATCAAG GTGCATTCTC AGTCGGAAGA GTGCAGACGC CAACATTACG GCTTGTGGTC
GATAGAGATA GCCAAGTTGA GCAGTTTGAA CCACAGTCGT ATTACGATAT CACTGGCTTA
TTTAATGCAA CGATCCCGTT TAAAGCCAAA TGGCAAGTGC CTGATAATCT TGGGGATGAG
CAAGGCCGCT GCTTACAAGT GACGACTGTT GATCATGTCT TGTCTCAATG TCGTGACCAA
CCTGGTACAG TCACGCAATT CGATACCAAG CGGCAAAAAT CTAAACACCC ACCGTTATTT
TTCTTAGGTT CTTTGCAAAA GGCCATGTCT GCTAAGTTTG GCTATGGCGC TAAAGAAGTA
CTCGATATTG CGCAATCTTT ATATGAGAAA TATAAGGTCA CGACTTACCC CCGAACAGAT
TGTCCTTATT TGCCCTTATC TCAGAAGGAG GAGGTTGGCT CAATCCTCGA TAAACTCAAG
GTTGTGCCAG CATTTGCTGC ATGGTGTAGC GCTGCAGATG TAAATGAAAC AAGTGCCTGT
TGGAATGATA AGAAAATTAC GGCTCACCAC GGGATTATTC CATTACCGGT GACACCGAAA
TTGCATGAAA TGAACGAAAA GGAGCTGAAT CTTTATCATG CTATTGTGCA GCGATATCTC
GCTCAGTTTT ACCCAGTAGC GGAAGACGAT GCCACAACAA TTGAACTGAT GGTTGGAAGC
CAAAGTGTTA AAGCGACGGG CAAGGTTGAG CGAGTGAAAG GCTGGCGCTT GGTGACAGGT
AAAGACAGTG AGGATGAAAC TACCGATGAC AGTGCTAATT TGCCGCTGTT GAGCATCGGA
CAAACCTTAA CAGCACAGTT TCAGCGAGAA GATAAGCGAA CAAAGCCACC TGGACGTTTT
ACGGAAGGAA CGCTGATTGA TGCAATGTCA AATATCGCTA AATTTGAAAG TGATCCCAAA
CTCAAATCCA TTTTAAAAGA AACCTCAGGC ATTGGTACTG AAGCAACCCG AGCAAACATT
ATCGATACGC TCAAAGCGCG GGGATTTGTC ACTGTTACGG GGAAGCAGTT GATAAGCTCA
GAAGCCGGAA GATCACTCAT CGATGCGTTG CCAGATGTGC TCACCAGACC CGCTATGACA
GCATTGTGGG AACAAGCACT CGATGAGATT GCATTGGGTA ATGGTTCACT GGATGATTTC
ATGGCAAGGC AAAGTACATT TATCACGCAA TTAGTCTCTA TGTTCAAACA AGGGCAATAC
ACATTAAAGC TGCCAAAGGT TTTGGCTGTG ACACTCCCGT GCCCAGTATG TCAAAAATCG
ATGAAACAAT TGTCGGGGAA AAACGGTAAG TTCTGGGTAT GCGAGGACAA AGAACAATGT
GGTCTATTGC TTAATGATGA GCGCGGGAAA TTGCCTAAAA CAACACCTTG TACATGTAAG
AAAGGGGTGC TTGTTAGAAA AAAAGCCAAA ACGAAAGGTA AGTTCTGGTG GGGATGCTCG
GCATATCAAT CAGGTTGCCA GCGACGATTG TTTGATAATG AGGGTAAGCC TGGTAAGGAG
ATGGAGAGCA ATAACCAAAC ATAG
|
|---|
| Protein sequence | MRLFLCEKPS QAKDIASVLG CKRGDGVFTG DGIAVTFCVG HVLQQAEPEN YNPDFETWNI
VDLPIIPTVW KMLVSPKTKA QFAIVKKQLA KATEVIIATD ADREGEVIAR EVLEYVNYKG
PIQRLWLSAL DDASIKKALA SLRPNHETAK LYDAGLGRSR GDWLIGMNMT RLCTLLSREY
GYQGAFSVGR VQTPTLRLVV DRDSQVEQFE PQSYYDITGL FNATIPFKAK WQVPDNLGDE
QGRCLQVTTV DHVLSQCRDQ PGTVTQFDTK RQKSKHPPLF FLGSLQKAMS AKFGYGAKEV
LDIAQSLYEK YKVTTYPRTD CPYLPLSQKE EVGSILDKLK VVPAFAAWCS AADVNETSAC
WNDKKITAHH GIIPLPVTPK LHEMNEKELN LYHAIVQRYL AQFYPVAEDD ATTIELMVGS
QSVKATGKVE RVKGWRLVTG KDSEDETTDD SANLPLLSIG QTLTAQFQRE DKRTKPPGRF
TEGTLIDAMS NIAKFESDPK LKSILKETSG IGTEATRANI IDTLKARGFV TVTGKQLISS
EAGRSLIDAL PDVLTRPAMT ALWEQALDEI ALGNGSLDDF MARQSTFITQ LVSMFKQGQY
TLKLPKVLAV TLPCPVCQKS MKQLSGKNGK FWVCEDKEQC GLLLNDERGK LPKTTPCTCK
KGVLVRKKAK TKGKFWWGCS AYQSGCQRRL FDNEGKPGKE MESNNQT
|
|---|
| |