Gene Cthe_3170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_3170 
Symbol 
ID4809620 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand+ 
Start bp3746174 
End bp3746827 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content42% 
IMG OID640108603 
ProductABC transporter related protein 
Protein accessionYP_001039558 
Protein GI125975648 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0178954 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCTCTCC AGGACATTAA CATGGAAATT TACAAAGGTG AATTTTGTTG CTTTTTGGGT 
ACTTCCGGCT CGGGAAAATC AACGCTTTTG AATGTGCTTG CCGGACTTGA AAAGCCAACC 
AGGGGAAGTA TAAAAATCAA AAATGTAAAT ATTGAAAAGC TTAATGAAAA AAAACTTGCG 
GCATTTCGAC AGGATAATGT TGGCTTTGTA TTTCAGGCAT ACAATCTTGT CAGTCATCTG 
GACGCTGTTG AAAATGTCAG CCTTCCTCTC ATGTTCAAAG GCGTACCCAA AAAGGAAAGG 
ACGAAAAGAG CTGTTGAGCT TTTGAAAGCA GTGGGGCTTT CCAAACATCT CAGACACAAG 
CCCACCCAGA TGAGCGGAGG TCAACAGCAA AGAGTCGGCA TAGCAAGAGC CTTTGTTACA 
AATCCCGAAA TTGTATTTGC CGATGAGCCT ACAGGAAATC TGGATTCAAA GACATCCATG 
GAGGTTCTGG AGCTTATGGC GGGTTTGGCA ATGAAAAACC GCCAGACTTT GATTATGGTT 
ACCCATGACC TTAATATTGC AAAACGGGCT GACAGAATAA TTTACATATT GGACGGAAGA 
ATTGAAGGAA TAGAAGAAAA TCAGTATGCG GGGGTTACGT ATGAGCAAAA TTAA
 
Protein sequence
MALQDINMEI YKGEFCCFLG TSGSGKSTLL NVLAGLEKPT RGSIKIKNVN IEKLNEKKLA 
AFRQDNVGFV FQAYNLVSHL DAVENVSLPL MFKGVPKKER TKRAVELLKA VGLSKHLRHK 
PTQMSGGQQQ RVGIARAFVT NPEIVFADEP TGNLDSKTSM EVLELMAGLA MKNRQTLIMV 
THDLNIAKRA DRIIYILDGR IEGIEENQYA GVTYEQN