Gene Cthe_3109 details

Gene Information

• Locus tag: Cthe_3109
• ID: 4809735
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: +
• Start bp: 3664317
• End bp: 3664895
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640108537
• Product: uracil-DNA glycosylase superfamily protein
• Protein accession: YP_001039497
• Protein GI: 125975587
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1573] Uracil-DNA glycosylase
• TIGRFAM ID: [TIGR00758] uracil-DNA glycosylase, family 4

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAAAT CAGAACGGCT GAAAGAATTA TATGATTTAT ACAGGAAAGA ATTCCAGGAA 
AGAGAAATTG TTTTGGGAGA CGGAAATGTT AATTCCAGAT TGGTATTGAT AGGAGAAGCT 
CCGGGGAAAG ATGAGGTTTT GAAATCAAAA CCTTTTGTAG GTGCTGCGGG GAAAAACCTT 
GCGGAATTTT TGGACGTGCT GGGACTGAAA AGGGAGGATA TATATATAAC CAATGCAATC 
AAATACAGGC TCTCAAAGGT AAAACCGGAA ACGAACAGGG TTTCAAACAG ACCTGCGACC 
AAAAATGAGA TTCTTGAAAA CAGGAGCTAT TTATTGAAGG AGATTGAGAT TATTAATCCC 
GAGTATATCG TTACTTTGGG CAATGTACCT TTAAGGTCGG TATATGGAGA CTTTAGCATT 
TCCATCGGTG AAGTTCATGG TACATTGACC AGGGTTGAGG TTTTGGGGAC AGAGTTTAAC 
CTGTTTCCGC TTTACCATCC TGCAAGTATT ATATATAATG TAAAGCTGAA AGAAATTTAT 
AATGAAGATT TAAACAAACT GAGAATGATA ATCGGTTAA 

 

Protein sequence

MSKSERLKEL YDLYRKEFQE REIVLGDGNV NSRLVLIGEA PGKDEVLKSK PFVGAAGKNL 
AEFLDVLGLK REDIYITNAI KYRLSKVKPE TNRVSNRPAT KNEILENRSY LLKEIEIINP 
EYIVTLGNVP LRSVYGDFSI SIGEVHGTLT RVEVLGTEFN LFPLYHPASI IYNVKLKEIY 
NEDLNKLRMI IG