Gene Cthe_3003 details

Gene Information

• Locus tag: Cthe_3003
• ID: 4811151
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: -
• Start bp: 3525027
• End bp: 3526961
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640108424
• Product: hydrogenase, Fe-only
• Protein accession: YP_001039392
• Protein GI: 125975482
• COG category: [R] General function prediction only
• COG ID: [COG4624] Iron only hydrogenase large subunit, C-terminal domain
• TIGRFAM ID: [TIGR02512] hydrogenases, Fe-only

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAGTT TCCTGATGAA AGGTTATATC AAAGAGGCAA ACATAGATTA CAGCTGCAGC 
CGTGGTTCCA TGGAAGACTT ACCAAAGTGG GAATTCCGCG AAATACCGAA AGTTCCTCGT 
GCGGTAATGC CTTCCCTTTC TCTGGAAGAG CGTAAAAACA ATTTTAACGA GGTTGAATTG 
GGTCTTTCTG AAGAAGTTGC AAGAAAAGAA GCACGCCGCT GTTTAAAATG CGGATGCAGC 
GCCCGTTTCA CCTGCGATTT GAGAAAAGAA GCAAGCAATC ATGGCATTGT ATATGAAGAA 
CCAATTCACG ACCGCCCATA TATCCCGAAA GTTGATGACC ATCCTTTCAT CGTAAGGGAT 
CACAACAAGT GTATCTCCTG CGGCCGTTGT ATTGCCGCAT GTGCTGAAAT TGAAGGCCCG 
GGCGTTCTCA CCTTCTATAT GAAAAACGGT CGCCAGCTTG TAGGTACAAA AAGCGGTCTT 
CCTCTCAGGG ACACAGACTG CGTAAGCTGC GGTCAGTGTG TTACTGCATG TCCTTGCGCC 
GCTCTCGATT ATCGCCGTGA GAGAGGAAAG GTGGTAAGGG CAATCAACGA TCCCAAAAAG 
ACTGTTGTCG GATTTGTCGC ACCGGCAGTT CGCAGTCTTA TATCCAACAC CTTCGGTGTC 
TCATATGAGG AAGCATCTCC GTTTATGGCA GGCCTGCTTA AAAAGCTTGG CTTTGACAAG 
GTGTTTGACT TTACCTTTGC CGCAGACCTG ACTATTGTGG AAGAAACCAC GGAGTTCCTC 
TCAAGGATAC AAAACAAGGG TGTAATGCCT CAATTTACAT CCTGTTGTCC GGGATGGATC 
AATTTCGTTG AAAAGAGATA CCCCGAAATA ATCCCTCACC TGTCCACCTG CAAATCACCG 
CAGATGATGA TGGGTGCAAC AGTTAAAAAT CACTATGCAA AACTTATGGG AATAAATAAA 
GAGGATCTTT TCGTGGTATC CATAGTTCCA TGTCTTGCGA AGAAATATGA AGCTGCCCGT 
CCGGAGTTTA TCCACGACGG CATCCGCGAT GTGGACGCAG TTCTTACAAC TACGGAAATG 
CTTGAAATGA TGGAACTTGC CGATATCAAA CCTTCGGAAG TGGTTCCTCA GGAATTTGAC 
GAGCCTTACA AACAGGTTTC CGGTGCCGGA ATACTGTTTG GTGCTTCCGG CGGTGTGGCT 
GAAGCCGCCC TTCGTATGGC CGTTGAGAAA CTTACAGGAA AAGTGCTCAC CGACCACCTT 
GAATTTGAAG AAATTCGCGG CTTTGAAGGT GTGAAAGAAT CCACCATAGA CGTAAACGGC 
ACAAAAGTGC GCGTGGCAGT TGTCAGCGGC CTTAAGAATG CTGAACCTAT CATTGAAAAA 
ATACTCAACG GGGTTGACGT GGGATACGAC CTCATAGAAG TAATGGCATG CCCCGGTGGA 
TGTATCTGCG GAGCCGGACA TCCGGTCCCC GAAAAAATAG ATTCTCTTGA AAAGCGCCAG 
CAAGTTCTTG TAAATATAGA CAAAGTTTCG AAATACAGAA AATCCCAGGA GAATCCGGAT 
ATCTTAAGGC TGTACAATGA ATTTTACGGT GAACCGAATT CTCCTCTGGC TCACGAACTT 
TTGCACACAC ATTATACTCC AAAGCACGGT GACAGTACCT GCAGCCCTGA ACGTAAAAAA 
GGAACGGCAG CATTTGATGT GCAAGAGTTT ACAATCTGCA TGTGCGAATC CTGCATGGAG 
AAGGGCGCTG AAAATCTCTA CAACGATTTA AGCTCAAAAA TTAGACTGTT CAAAATGGAT 
CCGTTTGTGC AAATAAAGAG AATTCGATTA AAAGAAACCC ATCCGGGCAA AGGCGTGTAT 
ATCGCCCTTA ACGGAAAACA AATTGAGGAG CCTATGCTCA GCGGTAATAT CCCGGACGAA 
TCAGAATCAG AATAA 

 

Protein sequence

MDSFLMKGYI KEANIDYSCS RGSMEDLPKW EFREIPKVPR AVMPSLSLEE RKNNFNEVEL 
GLSEEVARKE ARRCLKCGCS ARFTCDLRKE ASNHGIVYEE PIHDRPYIPK VDDHPFIVRD 
HNKCISCGRC IAACAEIEGP GVLTFYMKNG RQLVGTKSGL PLRDTDCVSC GQCVTACPCA 
ALDYRRERGK VVRAINDPKK TVVGFVAPAV RSLISNTFGV SYEEASPFMA GLLKKLGFDK 
VFDFTFAADL TIVEETTEFL SRIQNKGVMP QFTSCCPGWI NFVEKRYPEI IPHLSTCKSP 
QMMMGATVKN HYAKLMGINK EDLFVVSIVP CLAKKYEAAR PEFIHDGIRD VDAVLTTTEM 
LEMMELADIK PSEVVPQEFD EPYKQVSGAG ILFGASGGVA EAALRMAVEK LTGKVLTDHL 
EFEEIRGFEG VKESTIDVNG TKVRVAVVSG LKNAEPIIEK ILNGVDVGYD LIEVMACPGG 
CICGAGHPVP EKIDSLEKRQ QVLVNIDKVS KYRKSQENPD ILRLYNEFYG EPNSPLAHEL 
LHTHYTPKHG DSTCSPERKK GTAAFDVQEF TICMCESCME KGAENLYNDL SSKIRLFKMD 
PFVQIKRIRL KETHPGKGVY IALNGKQIEE PMLSGNIPDE SESE