Gene Cthe_2904 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_2904 
SymbolrplD 
ID4809115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand
Start bp3434171 
End bp3434797 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content41% 
IMG OID640108327 
Product50S ribosomal protein L4 
Protein accessionYP_001039295 
Protein GI125975385 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value8.79055e-09 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGAAAG TTGATGTATA TGATATAAAC GGTAAAGTAG TCGGTGAGAT AAATTTAAGG 
GATGACATTT TTGGAATTGA AGTCAACAAA CACGCCATTC ACCAGGTTAT TGTAAACCAG
CTGGCAAACA GAAGACAGGG CACTCAGTCA ACAAAGACAA AAAGTGAAGT GCGCGGAGGC
GGCAGAAAAC CCTGGAGACA GAAGGGTACC GGAAGAGCAA GACACGGTAG CATCCGTTCG
GCACAGTGGG TAAAAGGCGG AATAGCACTT GGACCGAAGC CGAGAAGCTA CAAATATGCA
GTTCCTAAGA AACTTAGAAG ACTTGCGCTA AAGTCGGCAT TATCATCAAA GGTCAATGAA
AATGAATTGC TTGTACTTGA CAGTTTGAAT TTCGATGAAA TAAAGACAAA GCAAATGGCA
AATGTTTTGA AAAATCTGAA GGTTAATGAT ACTACTGCTG TATTGGTTTT GGCTGACAAG
AACAGAAATG TGGAATTGTC GGCGAGAAAC ATTCCGGGGT TGAAGACTTT GTTTGTTAAT
ACAATGAATG TGTATGACAT AATAAGACAT GACAAGTTTA TAATCACCAA GGATGCCGTA
GCAAAGGTTG AGGAGGTGTA CGCATAA
 
Protein sequence
MPKVDVYDIN GKVVGEINLR DDIFGIEVNK HAIHQVIVNQ LANRRQGTQS TKTKSEVRGG 
GRKPWRQKGT GRARHGSIRS AQWVKGGIAL GPKPRSYKYA VPKKLRRLAL KSALSSKVNE
NELLVLDSLN FDEIKTKQMA NVLKNLKVND TTAVLVLADK NRNVELSARN IPGLKTLFVN
TMNVYDIIRH DKFIITKDAV AKVEEVYA