Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_2904 |
Symbol | rplD |
ID | 4809115 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | + |
Start bp | 3434171 |
End bp | 3434797 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640108327 |
Product | 50S ribosomal protein L4 |
Protein accession | YP_001039295 |
Protein GI | 125975385 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0088] Ribosomal protein L4 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000000879055 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGAAAG TTGATGTATA TGATATAAAC GGTAAAGTAG TCGGTGAGAT AAATTTAAGG GATGACATTT TTGGAATTGA AGTCAACAAA CACGCCATTC ACCAGGTTAT TGTAAACCAG CTGGCAAACA GAAGACAGGG CACTCAGTCA ACAAAGACAA AAAGTGAAGT GCGCGGAGGC GGCAGAAAAC CCTGGAGACA GAAGGGTACC GGAAGAGCAA GACACGGTAG CATCCGTTCG GCACAGTGGG TAAAAGGCGG AATAGCACTT GGACCGAAGC CGAGAAGCTA CAAATATGCA GTTCCTAAGA AACTTAGAAG ACTTGCGCTA AAGTCGGCAT TATCATCAAA GGTCAATGAA AATGAATTGC TTGTACTTGA CAGTTTGAAT TTCGATGAAA TAAAGACAAA GCAAATGGCA AATGTTTTGA AAAATCTGAA GGTTAATGAT ACTACTGCTG TATTGGTTTT GGCTGACAAG AACAGAAATG TGGAATTGTC GGCGAGAAAC ATTCCGGGGT TGAAGACTTT GTTTGTTAAT ACAATGAATG TGTATGACAT AATAAGACAT GACAAGTTTA TAATCACCAA GGATGCCGTA GCAAAGGTTG AGGAGGTGTA CGCATAA
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Protein sequence | MPKVDVYDIN GKVVGEINLR DDIFGIEVNK HAIHQVIVNQ LANRRQGTQS TKTKSEVRGG GRKPWRQKGT GRARHGSIRS AQWVKGGIAL GPKPRSYKYA VPKKLRRLAL KSALSSKVNE NELLVLDSLN FDEIKTKQMA NVLKNLKVND TTAVLVLADK NRNVELSARN IPGLKTLFVN TMNVYDIIRH DKFIITKDAV AKVEEVYA
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