Gene Cthe_2209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_2209 
Symbol 
ID4811074 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand- 
Start bp2638003 
End bp2639091 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content47% 
IMG OID640107615 
Product3-isopropylmalate dehydrogenase 
Protein accessionYP_001038604 
Protein GI125974694 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00169] 3-isopropylmalate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.000258319 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGAAAGT ATAAAATAGC GGTACTTCCG GGTGACGGTA TAGGGCCGGA AGTTATTGAA 
CAGGCGGTTA AGGTAATTGA AGCTGTGGGT GAGATATACA ATCACAGTTT TGAATTAAAA 
GAAGGCCTGC TCGGTGGATG TGCCATTGAT GCCACCGGCG AGCCCTTCCC AAAAGAGACA 
CTGGAACTCT GCAAGTCCTC TGATGCAGTT TTGCTGGGGG CCGTAGGCGG ACCGAAATGG 
GATAACCTTC CGGGGGACAA AAGACCTGAA GCGGGTCTTC TTGGAATACG CGGAGCATTG 
GGCTTGTATG CAAATTTAAG GCCTGCGGTT ATCTATCAGG CACTCAAAGG TGCGTCGCCA 
CTGCGCTCCG ATATTGTAAA AGACGGCATT GACATAATGG TGGTAAGAGA GCTTACCGGC 
GGTATGTATT TTGGCGAAAG AGGAAGAGTG CAGACGGAGA ATATGGGTCA GGCCGCTTTT 
GACACAGAAA AGTACAGCGA GTTTGAAGTT GAAAGAATTG CACGGCTGGC GTTTGAGACG 
GCCATGAAGA GAAATAAGAA ACTCACATCT GTGGACAAAG CCAATGTACT GGAAAGCTCA 
AGACTTTGGA GGGAAGTTGT TAACAGGGTT GCTTCAGACT ATCCGGAAGT TGAGCTTAAT 
CATATGTATG TGGACAATGC CGCCATGCAG CTGGTAAGGA ATCCTGCGCA GTTTGACGTT 
ATAGTTACAT CAAATATGTT CGGTGATATT CTCTCCGACG AGGCGTCTAT GATTACCGGC 
TCAATAGGCA TGCTTCCTTC GGCAAGTCTT GGAGAAGGCT CATTGGGGCT TTATGAACCA 
ATACATGGTT CCGCGCCGGA CATAGCGGGG CAGGACAAAG CAAATCCCAT TGCCACAATA 
CTTTCAGTAG CTATGATGAT GAAATACTCC TTCGGTCTTG AAGATGCTTT CAGGGCTATT 
GAAAATGCCG TCGTAAATGT GCTTGGCATG GGATACAGAA CGGCGGACAT TGCTTCCCCG 
GATACTCCTC GTGAGAATAT AGTCGGAACA AAGGAAATGG GAAGGTTAAT AATTTCAAAA 
TTAAAATAA
 
Protein sequence
MGKYKIAVLP GDGIGPEVIE QAVKVIEAVG EIYNHSFELK EGLLGGCAID ATGEPFPKET 
LELCKSSDAV LLGAVGGPKW DNLPGDKRPE AGLLGIRGAL GLYANLRPAV IYQALKGASP 
LRSDIVKDGI DIMVVRELTG GMYFGERGRV QTENMGQAAF DTEKYSEFEV ERIARLAFET 
AMKRNKKLTS VDKANVLESS RLWREVVNRV ASDYPEVELN HMYVDNAAMQ LVRNPAQFDV 
IVTSNMFGDI LSDEASMITG SIGMLPSASL GEGSLGLYEP IHGSAPDIAG QDKANPIATI 
LSVAMMMKYS FGLEDAFRAI ENAVVNVLGM GYRTADIASP DTPRENIVGT KEMGRLIISK 
LK