Gene Cthe_2174 details

Gene Information

• Locus tag: Cthe_2174
• Symbol: rho
• ID: 4810887
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: -
• Start bp: 2587649
• End bp: 2589610
• Gene Length: 1962 bp
• Protein Length: 653 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 640107577
• Product: transcription termination factor Rho
• Protein accession: YP_001038569
• Protein GI: 125974659
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.000000672374
• Plasmid hitchhiking: No
• Plasmid clonability: unclonable

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACGAAA TAAAGCTGAG GGAAAAAACG CTTGAGGATT TAAGGTATAT TGCTAAAATG 
TTGGGGATAA AAAGAGTTAC CACATATAAA AAAAGTGAAC TTATCGAAAA AATTTGCGAA 
GTGGGCAGAA ACAATGGTAT AGATGATGCT CAGCAACAAG TCGTTGGAGA AGATGAAAAA 
GAAAAAACAG TTGTTGGAGA AGATGAAAAA GAAAAAACAG TTGATAATAA AGATGGGCAA 
AAGGATGAGA AAAATGACGG CCAGGTTTCT CAAAACACAG AAGCTCCTGT AGCTGAGGAA 
CAGCCGGTGG TGCTGAGAAA ATCCAAAAGG GGGAGACCGA AATCAGTCAA GGTTCAGCAA 
CAGCAGGAAG AGGCAAATGT CGAGTCTGCT CCGGTAAAAG CTGAGGAAAA CAAATCCGAA 
GCTGAATCCA AGATTGAGTC AAAATCCGAA TCTGAAAAAG CCGAATCAAA ATCCGAATCC 
AAAGAACCTG AATCGAAATC CGAATCCAAA ACAAAGAGAG GACCAAAATC AAAAACTGAA 
TCCAAAGAGG CTGAAGCTGC TCAAAACAAT CAGGATGCAG CTGAAAGTGC TGATGCTTCA 
AAGGCAGATT CTGAGGAAGC TTTAGCGCAG CAAAAAGAGC AAAGCGATGA CAAAGCTTCG 
GAACAGGATG CTGTAAAACA GGAACAAGCC GTAAGCACTG CAGAAGGTTC GATGGCTAAA 
GCGGAAACTG AGACGGTGCC GGATGCCGAT GCAGAAAAGG CAAAGGCGGA GCGCAAACAG 
CCCGAGCAAA AGAAAGAAGG CGACAAACTT CCAAGTGTAT TTGAAAAGAT TGAAAGTGAC 
GACCCGGTGG AAGGAGTACT GGAAGTATTG CCTGACGGCT ATGGATTTTT AAGGAGCGAC 
AATTATCTTT CCGGTCCTAA AGATGTGTAT GTATCACCGT CGCAAATCAG ACGTTTCAAC 
TTGAAAACAG GAGATAAAAT AAAAGGAAAA GGGCGTATTC CGAAAGAAGG AGAGAAATTC 
CAGGCTCTGC TCTATGTCCA ATCGGTTAAT GGAGATCCTC CGGAAGTTGC GGCCAAGAGA 
ATACCTTTTG ACCAGTTAAC GCCGATTTAT CCTGACGAAA GGATTACTCT TGAAACCACT 
CCGAGAGAAT TGTCAACGAG GATGATTGAT TTAATAGCTC CCATTGGAAA AGGACAGCGC 
GGTATGATTG TTTCACCTCC CAAAGCGGGT AAGACCGTAC TGTTAAAGAA AATTGCAAAC 
GCTATTAGTA CCAATTATCC TGAGATGGAG CTGATTGTAC TTCTTATAGA TGAAAGACCT 
GAAGAGGTAA CAGACATGCA GCGCTCCATT AAGGGCGAGG TAATATATTC CACTTTTGAT 
GAAGTTCCGG AGCATCATAT AAAGGTTGCC GAAATGGTGC TTGAAAGGGC TCAGAGACTT 
GTTGAACAGA AAAAAGATGT TGTAATATTG CTTGACAGTA TCACAAGGCT TGCAAGGGCA 
TACAATCTTA CAATTCCTCC TACAGGAAGA ACTCTTTCGG GTGGTCTTGA CCCGGGGGCG 
CTTCACAAGC CGAAAAGATT CTTTGGTGCA GCAAGAAATA TTGAGAACGG CGGAAGCCTT 
ACAATTATGG CAACGGCTTT GATTGAAACG GGAAGCAGAA TGGACGACGT TATATTTGAA 
GAGTTCAAGG GAACCGGAAA CATGGAGATC CATCTTGACA GAAAGCTTTC CGAAAAGAGA 
ATATTCCCTG CAATAGATAT AAACAAATCC GGAACCAGAA GAGAGGAATT GCTCCTTGAC 
CAGAAGGAGC TTGAAGGAAT TTGGGCTATC AGGAAAGCAA TGAGCAATCT GGGAACGGCT 
GAAGTTACTG AAATAATTAT AAACCGTTTG ATGCAGACCA AAAGCAATGC TGAATTTGTA 
AACAGTATAA ACGTTGCATT TCTTGGGGAA GTTGTAAAAT AA 

 

Protein sequence

MDEIKLREKT LEDLRYIAKM LGIKRVTTYK KSELIEKICE VGRNNGIDDA QQQVVGEDEK 
EKTVVGEDEK EKTVDNKDGQ KDEKNDGQVS QNTEAPVAEE QPVVLRKSKR GRPKSVKVQQ 
QQEEANVESA PVKAEENKSE AESKIESKSE SEKAESKSES KEPESKSESK TKRGPKSKTE 
SKEAEAAQNN QDAAESADAS KADSEEALAQ QKEQSDDKAS EQDAVKQEQA VSTAEGSMAK 
AETETVPDAD AEKAKAERKQ PEQKKEGDKL PSVFEKIESD DPVEGVLEVL PDGYGFLRSD 
NYLSGPKDVY VSPSQIRRFN LKTGDKIKGK GRIPKEGEKF QALLYVQSVN GDPPEVAAKR 
IPFDQLTPIY PDERITLETT PRELSTRMID LIAPIGKGQR GMIVSPPKAG KTVLLKKIAN 
AISTNYPEME LIVLLIDERP EEVTDMQRSI KGEVIYSTFD EVPEHHIKVA EMVLERAQRL 
VEQKKDVVIL LDSITRLARA YNLTIPPTGR TLSGGLDPGA LHKPKRFFGA ARNIENGGSL 
TIMATALIET GSRMDDVIFE EFKGTGNMEI HLDRKLSEKR IFPAIDINKS GTRREELLLD 
QKELEGIWAI RKAMSNLGTA EVTEIIINRL MQTKSNAEFV NSINVAFLGE VVK