Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_2000 |
Symbol | |
ID | 4810932 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | - |
Start bp | 2380863 |
End bp | 2381699 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640107415 |
Product | integrase catalytic subunit |
Protein accession | YP_001038410 |
Protein GI | 125974500 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.887951 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGATA GAAATGAGAA GAAACTCAGC ATAACAAGGC AAGCAGAATT ATTGAGCTTA AACCGTACGA GCGTTTACTA CAAGCCTGCT CCGGTAAATG AGGAGGAATA CCTGATTAAG CGTATCATTG ATGAAATTTA CGCGTCTTAT CCGGAATATG GCTATCGCAG GATGACAAGT ATATTGAACA AGGATTATCA CATTCATATC AATCGAAAAC GGACCCGGCG TTATATGAGG GAAATGGGCA TACATGGATT CTGTCCTGGC CCCAACCTCA GCAAACGAAT ACATGGTAAG AATTTGTATC CATATCTGTT GAGAAACTTG AAAATTGATC ATCCTAATCA GGTATGGTCC ATAGATGTGA CCTATTGCCG AATGAAACGC GGTTTCATGT ATATGGTTGC AATAATAGAC TGGTATTCTC GGTATATTGT TGGGTTTGAA CTATCAAACA CTCTTGATAA GACATTCGTC ATAGAAGCAA TCCAAAAGGC CATAAAGCGA TATGGCAAGC CTGAAATCAT GAACAGTGAT CAAGGCTCAC AGTTTACCAG TGATGATTAC ATAAATCTAT TAAAAAATAA CGGTATCAAA ATATCTATGG ATGGAAAAGG AAGAGCATTA GACAACCAAA GGATAGAACG ATTTTTCCGT TCCTACAAGT GGGAGAAACT TTATCTTGAA GAGTGCGAAA CGGTACAACA ACTTAGACAA ATCACAAAGG AATATGTGGA GCACTATAAC CATAGGAGAC CGCACCAGTC ATTGGATTAC AAAACACCGG CAGAGTATTA CTTTGGAGGA TATGACCAGC TACTGGCAGT TGTATAG
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Protein sequence | MIDRNEKKLS ITRQAELLSL NRTSVYYKPA PVNEEEYLIK RIIDEIYASY PEYGYRRMTS ILNKDYHIHI NRKRTRRYMR EMGIHGFCPG PNLSKRIHGK NLYPYLLRNL KIDHPNQVWS IDVTYCRMKR GFMYMVAIID WYSRYIVGFE LSNTLDKTFV IEAIQKAIKR YGKPEIMNSD QGSQFTSDDY INLLKNNGIK ISMDGKGRAL DNQRIERFFR SYKWEKLYLE ECETVQQLRQ ITKEYVEHYN HRRPHQSLDY KTPAEYYFGG YDQLLAVV
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