Gene Cthe_1940 details

Gene Information

• Locus tag: Cthe_1940
• ID: 4810723
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: -
• Start bp: 2316456
• End bp: 2317196
• Gene Length: 741 bp
• Protein Length: 246 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 640107356
• Product: RDD domain-containing protein
• Protein accession: YP_001038351
• Protein GI: 125974441

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.000546955
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGTTA GTGGGGTGTT AAGAAGATAT TTTGCCTGGC TTATTGATAG TATTATACTT 
GCCGGATTAA CTTTCGGACT GACAATGTTT TTGGAAGCTT TGGGTGTGGG AGTGCCTCTT 
AATGAATTGG TTCAGGCAAT GATCAGAAAA ACTGAACAGT CACTTGAGGT AATTAACAGT 
TTTCAATTGG AAGTTTGGGC CATATACGCG GTATTGTTTT TTATATACGA AATCGTTTTT 
GTGGCTTCCA GTTTATCCGC CACTCCGGGG AAAATAATCC TTGGCATTGA AATTGTAAGC 
GACAGGAAAA GCAGCATTGA CAAGGTTATT ATAAGGGCAC TGGTTAAGTT TATAGGTGAA 
ATGTTTCCTT TTTCCCTTGT TAATTTTATT ATAGTATTAG TCAGTGGAAA AAAACAGTCA 
TTGCATGACA AAGCTGCAAG AACGTACGTG GTTTACAAAA AGGTTGAGAA TAATTATTCA 
AAAAAAATAG ATCCCAAAGA GCTGTTTGAG GAAATGAAAA GAAGGGGACT TAGAACTTAC 
AGTGAGCAAT TGGCGTTGGC TGAAGAACTG TATGGCAAAA ACAGAAAGAA GGCCAGGACG 
TCAGCTTCCT ATGGATGGAT AAGTTTGGTG TTGCTTATTG TTGGATTGGT TTTGTTTGGT 
GTGTTTTTCT CAAGATATCT TTCAATATAC AGAGAAATAT ATACAGATGC ATTTATAAGA 
GATTATATAC ACTATAATTA A 

 

Protein sequence

MTVSGVLRRY FAWLIDSIIL AGLTFGLTMF LEALGVGVPL NELVQAMIRK TEQSLEVINS 
FQLEVWAIYA VLFFIYEIVF VASSLSATPG KIILGIEIVS DRKSSIDKVI IRALVKFIGE 
MFPFSLVNFI IVLVSGKKQS LHDKAARTYV VYKKVENNYS KKIDPKELFE EMKRRGLRTY 
SEQLALAEEL YGKNRKKART SASYGWISLV LLIVGLVLFG VFFSRYLSIY REIYTDAFIR 
DYIHYN