| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1778 |
|---|
| Symbol | |
|---|
| ID | 4810023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 2100038 |
|---|
| End bp | 2100997 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640107192 |
|---|
| Product | copper amine oxidase-like protein |
|---|
| Protein accession | YP_001038192 |
|---|
| Protein GI | 125974282 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000103341 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAA AAGGTTTTGT TAGTCTGCTT GTGTCGATTT TATTAATTGC GGTAAGTGTC
ATTGCACCGG TCGGTGTGTT TGCACAGAAT CAGGGAAAAA CGATTGTGCT CCAGGTAAAT
AATACTGTTG CAACGGTTAA TAACGAAAGC GTAACTTTGG ATGCTGCTCC ATATATCGAC
GAAAGCAGCG GCAGGACATT GGTTCCCATA AGGTTTATAT CAGAATCTAT GGGATATTCC
GTTACATGGG ATGATGAAGA AAAAACAGTC AGGATTTTAA ACAAGGTTGA TATGAATACC
ATAGATGAAT CTGAAGTTGA TGAAACCACA GGTACATCAG TGGAATATTT CAGGTCATGG
AATACATACA AGTACATAAA ATTGAAAATA GGCAGCAATG TTGCCGAAAT ATGCGACAAT
TACATAATCG GTGAGTATGT TGAAATGACT GAGGTACCTA TAGATCAAGC TCCGGTTATT
AAAAATGGGA GAACAATGAT TCCTATAAGA TTTGTTGCGG AGCAGATGAA TTTAAAGGTG
GACTGGGACG GTAAAACCAA AAAAATAACA ATTTCATCGA CAGGAGAAGA ATACGTTCCC
GCTGCTATTG AAACTGCGCT TGAAAAAATT GCGGTATCCG GCACTTCGGA TACTGAAAAA
ACAGAAGATG ATCCTGCGTA TATAAAATCC AAAGAACCTC AGAATTATTT TTTAAAAATT
GAAAAACAAG GTTTTGAGTA TTCTGTGGAT TTGGCAGTTC AATCATCAGA AGGCACTGAA
GCTGTTTTAA ACGGAACGGT AATTGGACTG AAAGAGGATA AGGCATGCTT TACTTATACC
CTGAACAATC AGAAAAATTA CAAATATGAC GGAGTTATAC AGGCTACTGA TAATGGTATT
ATTGTAAACT ATACAAATGA AAAGGGTGAA AAGTGTTCTG TTACTTTCGC GGCTAACTGA
|
|---|
| Protein sequence | MNSKGFVSLL VSILLIAVSV IAPVGVFAQN QGKTIVLQVN NTVATVNNES VTLDAAPYID
ESSGRTLVPI RFISESMGYS VTWDDEEKTV RILNKVDMNT IDESEVDETT GTSVEYFRSW
NTYKYIKLKI GSNVAEICDN YIIGEYVEMT EVPIDQAPVI KNGRTMIPIR FVAEQMNLKV
DWDGKTKKIT ISSTGEEYVP AAIETALEKI AVSGTSDTEK TEDDPAYIKS KEPQNYFLKI
EKQGFEYSVD LAVQSSEGTE AVLNGTVIGL KEDKACFTYT LNNQKNYKYD GVIQATDNGI
IVNYTNEKGE KCSVTFAAN
|
|---|
| |