| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1742 |
|---|
| Symbol | |
|---|
| ID | 4810172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 2062994 |
|---|
| End bp | 2063317 |
|---|
| Gene Length | 324 bp |
|---|
| Protein Length | 107 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640107155 |
|---|
| Product | helix-turn-helix, type 11 containing protein |
|---|
| Protein accession | YP_001038156 |
|---|
| Protein GI | 125974246 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000021315 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACCAA ATGAAAGACG CATAGAAATC ATAGAAAGAT TATGTCATAG AAGGCAAGAC
ACAATGGCTA ACTTAGCAAA TGAGTTTGGG GTTAGTATTA GAACCATTAA AAATGATATT
GATATCCTAT CGCTTTCTTA CCCCATAGAA ACTATTCGAG GACGACATGG TGGAGGTATC
AAGATTACAG ATGGTTATAA GTTAAATCAA AAATATTTAA AACCTGAACA ATTGGAATTA
TTAAAAAGAT TAAGTATCCT GCTGTCAGGT GACGACCTTG CAGTAATGAA TAGCATTATC
AAAGACTTTG CTCTAAAAGC ATAA
|
|---|
| Protein sequence | MGPNERRIEI IERLCHRRQD TMANLANEFG VSIRTIKNDI DILSLSYPIE TIRGRHGGGI
KITDGYKLNQ KYLKPEQLEL LKRLSILLSG DDLAVMNSII KDFALKA
|
|---|
| |