| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1448 |
|---|
| Symbol | |
|---|
| ID | 4810598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1768194 |
|---|
| End bp | 1769606 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640106870 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001037871 |
|---|
| Protein GI | 125973961 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACA TATCTGCAAA TACAAGTTCA AGTGGCAATC CACTCGGTTA TGCACCTGTA
CTTGGATTAA TTGGCAAGTT TGCCATTCCG TCTATTATCA GCATGCTGGT TGCAGCAGCC
TATAATATTA CAGATCAGAT TTTCATCGGT CGTTTGGTTG GTATGCTTGG CAATGGAGCT
ACCAGTGTAG CCTTTCCTGT TGTAACCTTT ACAACGGCTT TTGCCCAGCT GATTGGAGTT
GGAACTGCAG CAAACTTCAA TATTAATATG GGTGCGAAAA GAGAGAAGGA GGCAAAGCAT
TTTGTCGGAA CAGGTATTAC ACTGATGCCT ACCGTCGGAC TGTTAATTTT CTGTATTGTA
TTTGTTCTGA AAAAACAAAT TCTTCTTCTT TGTGGTGCCA CGGAGAATGT ACTTCCCCTG
GCTATGACCT ATCTCGGCAT TACAGCCATA GGACTGCCTT TCCAGCTCTT TACTACTGCA
AGCAGCAGTT TGATTCGGGC TGACGGTAGC CCCACATATT CTATGATTTG TAATGTTACC
GGTGCTATAT TGAATGTGTT CCTGGATTGG TTGTTCATGT TTGTATTTGG CTGGGGAATT
CAAGGTGCTG CGACAGCAAC AGTGATTGGG CAGATTGTAT CCTTTCTCCT TTGTGCAATC
TACTATTTTA AGTTCAGAAC CTTTCAAATA ACCCGAAGAA TGTTGGGTAT AAAATGGTAT
TATGCAAAAC GGATTGCAAA ACTTGGAACT TCTAATTTCA TTAATCATAC CATTATGATG
CTTGTAAACA TTGTTTTGAA TAATAGCCTG AAAATCTACG GCGCCATGTC CATTTACGGC
AGCGATATTC CATTGGCAGT ATCCGGTATT ATTGCAAAAT TAAACAGTGT TCTTTCTGCC
TTTTCCATTG GTTTGGCACA AGGATGTCAG CCAATTTTAG GTTTTAATAT GGGGGCGAAA
AATTATTCCA GAGTGAAGGA AACTTATAAA AAAGCTGTCT CCATCGCTAT AGGTATTAGT
GTTCTGGCTT TTATTTTGTT TCAATGCTTT CCGAGACAAA TTACCGGGAT TTTCGGAAGC
GGAGATGAAC TATATGGAGA TGAACTGTAC TTTGAGTTTG CAGAGAAATA TCTGAAAATT
TATATGTTTA TGGTATGCGT TTTTGGTATA CAGCCAGTGA CAATCAATTA CTTTACCGGT
ACGGGAAATG TGAGGCAGGG AATTATACTT TCATTATCAA GGCAAGGTTT CTTTCTCATT
CCTTTGCTTT TGATTCTGCC ACAATTTCTG GGACTGACCG GTGTTCTTTA TGCTGGTCCC
ATAGCAGATT TCATGGCCTG CCTTCTGTCT CTTACCATGA TAACCTTAAA TTTTAAAAAA
TTAGATTCCG GGCGAGAGGT AGCTGATAAA TGA
|
|---|
| Protein sequence | MKDISANTSS SGNPLGYAPV LGLIGKFAIP SIISMLVAAA YNITDQIFIG RLVGMLGNGA
TSVAFPVVTF TTAFAQLIGV GTAANFNINM GAKREKEAKH FVGTGITLMP TVGLLIFCIV
FVLKKQILLL CGATENVLPL AMTYLGITAI GLPFQLFTTA SSSLIRADGS PTYSMICNVT
GAILNVFLDW LFMFVFGWGI QGAATATVIG QIVSFLLCAI YYFKFRTFQI TRRMLGIKWY
YAKRIAKLGT SNFINHTIMM LVNIVLNNSL KIYGAMSIYG SDIPLAVSGI IAKLNSVLSA
FSIGLAQGCQ PILGFNMGAK NYSRVKETYK KAVSIAIGIS VLAFILFQCF PRQITGIFGS
GDELYGDELY FEFAEKYLKI YMFMVCVFGI QPVTINYFTG TGNVRQGIIL SLSRQGFFLI
PLLLILPQFL GLTGVLYAGP IADFMACLLS LTMITLNFKK LDSGREVADK
|
|---|
| |