| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1446 |
|---|
| Symbol | |
|---|
| ID | 4810596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 1764431 |
|---|
| End bp | 1766968 |
|---|
| Gene Length | 2538 bp |
|---|
| Protein Length | 845 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640106868 |
|---|
| Product | peptidase S1 and S6, chymotrypsin/Hap |
|---|
| Protein accession | YP_001037869 |
|---|
| Protein GI | 125973959 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0617491 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATTTATT TTTGTCACGC TCCAAACGAC AGAGCTATTG CGGAAAAAAT ATATTTTTCG
CTTAAGCAAA CGGGTCTTAC ATGTTGGATT CCGTCACAGG ATATTATGGC CGGTCAATAC
TATGTGGAAG CTATAGCCAA CGCAATTGAA AAATCCGACA TCGTAGTTTT TATTTTTTCT
TCACACTCAA ATACATCCAT ACAAGTAATT GATGAATTGC AGAAAGCATC ATCACTGAAT
AAAACTATTA TTCCTTTCTG CGTTGACAGG GCAATGCCCT CAGAGCCAAT TGAACACTAT
TTGAGCAGCC CGTACAAAGT CGATGCAACA ATCGGTCTTC CAGATGATAA TATTGCAAAG
CTTCAGAACA TTATTAAGCA AATATATAAC CAATCTTCCG TACATAATGC TAATGACATT
AATACTGTTA AAGATACATT TGCGCCATCC AATCCATTAG AAAATAATAC AAACATCATA
AAAGATGCTT CGGATAACAA CAGCCAAGAG TCAATCCAAT TTAACGGGGT AATTAATTCA
GCTAATTCTC AACCTCCACA AAACCCAAAT TTGCCTCCAC AACACCAAAT GAATCCTAAC
TTTAACAACA CAGTCAATAA TATGGACAGA AATATGAACT ACCCAATAAA GCAAAATGTC
CGTCCCAATC CTCAAGTTAA ATCCTCCAAT AAAATCAAAA TTCCCCTTAT TATTGGCGGA
AGTATTGCAG GAGGAATCAT ATTATTGTCA ATTTTATTCA TGCTTGGGAA AAACCTATTA
TTTTCGACAT TAATAAACTC GCACAGACCG TCTGACAATC CAGTAATAGG TTCAAACATT
CGTATTGACG GCAGTAAATA TACCGAAGAA GAAATTATTG AATTTACAAA AAATGCTATT
TTAGAGCTGG ATAGATTGCA AGCCTCTCGT GAATTTTATG ATACCTATGC ATATAACGCA
CCGGAATATG ATCTAATGCG TATTCAGGAA AACGTATTCT TTTCACTTAT GGATTTGGAT
GTGGTGAGAT TTGAGGAAGT AGCTATTTTA GGTAAAAACG AAAAAGAACA CGGCATAGAA
TATCTCCTCA AAGTAGATTT TGTCTGCTAT GCGGATTATG AATATACGGA GAATAATGAA
ACTGTTCACC GCAAAGGAGA AGCATTATTG TACAATAATG TGGTAATACT TGAAACACCA
AATGACGGAT TAAAATACTT ATACATGGAA GGAATATTTG AAGATGAGTT AAATGCAAGA
AATGAGAACT TGGAGTCTTC ATATCGTGAA ATCGCCGAAT CCGGTGATGT AAACACTGAA
GACACCATCC AAACCTACTT GCCTGATTCA ACCGACGAAG ACACCATTAT GTCCGTAAAA
GATATCGTTA AGAAAAATGA CCACAAAGTT GTTGCCGTGT ACGTTGATGT ACCGGGAGGA
CAATCTCAAG GAAGCGGATT TTTTATAAAA GACGGTGTAA TAGTTACCAA TTATCATGTA
ATCGAGGGCG GAAAAAGTGC AAAAATTCTC CTTTCCAACG GAAATTACGT GGATGTGGAA
GGAGTTTTAT ACACGGATTC TGATGTTGAT ATTGCTGTAT TGAAATTGGT AAATGAAGTC
GGCATCGAGC CGGTAACCAT AGGTCAGGCC CGCGATTCCG ATAAAGGAAG TATCGCCGTT
GCTATTGGAT CACCTTTGGG ACTGTTTAAT ACAGTATCCA CAGGAATTAT ATCTAATTTC
TGGGAGGCCA ATGGAGTTAA CTTAATTCAA ATTTCCATCC CTATTACCCA CGGTAACTCC
GGAGGTGCCT TATTCAACGA GTCCGGTAAA TTAATCGGTA TCACATCCTC AGGAATAGGA
GAGGCAAATT TAAACTTCGC AATTTCTTCA ACCCATATAA TACCTATTTG TGAGGATATA
AAAAATATAC CCTATAATCA ATTAAATGCA GTTCCCCTTA GCAGTGCAGG CGGCAATATT
AATTCCATTA CCAGGCAAGC CGGATCTTCC AATAGCAATC AAAGCAGTTC TTCCGGCAAG
AGTCTTTTAT CTTCAAAATA CAGGTTTGTT AATTCCGATA AACCAATATC CAACGATGCA
ACATATACCT CTGACTTACA GACAATATAT GACCTGGCTT TAAACAAGTA TTATGCCAAA
GAAGATTTAT ACAGAGATCT TGATTACGCC TTTGACTATA TTTTGGATTA CGGCACAAAG
TATTATCTGG AATATTTAGA GTATATACTT CATGAAACAT ATATAAAAGA AGATGTAGAA
AACTTTAATA AGATAAATGA ATCTGTTCTG GAAGTGCTTA ACACCACAGG TGAATATATA
GAATTTACAG CGGATGAAAT TGAAATAATA GGTGCCGGAA TAAAAAACGA CGGCACTATT
GACGGTATTA TTGTGAGAGC TTTATTCTAT GAAAATTCGG AGCCTTATGT GAGATCAAAA
TTTTATTTCA GAGCTAACTA TGACGCATGG AGTTATGTTG ATGGCTTCTT GTATGTAGGA
GAAGTTACAG AAAAGTAA
|
|---|
| Protein sequence | MIYFCHAPND RAIAEKIYFS LKQTGLTCWI PSQDIMAGQY YVEAIANAIE KSDIVVFIFS
SHSNTSIQVI DELQKASSLN KTIIPFCVDR AMPSEPIEHY LSSPYKVDAT IGLPDDNIAK
LQNIIKQIYN QSSVHNANDI NTVKDTFAPS NPLENNTNII KDASDNNSQE SIQFNGVINS
ANSQPPQNPN LPPQHQMNPN FNNTVNNMDR NMNYPIKQNV RPNPQVKSSN KIKIPLIIGG
SIAGGIILLS ILFMLGKNLL FSTLINSHRP SDNPVIGSNI RIDGSKYTEE EIIEFTKNAI
LELDRLQASR EFYDTYAYNA PEYDLMRIQE NVFFSLMDLD VVRFEEVAIL GKNEKEHGIE
YLLKVDFVCY ADYEYTENNE TVHRKGEALL YNNVVILETP NDGLKYLYME GIFEDELNAR
NENLESSYRE IAESGDVNTE DTIQTYLPDS TDEDTIMSVK DIVKKNDHKV VAVYVDVPGG
QSQGSGFFIK DGVIVTNYHV IEGGKSAKIL LSNGNYVDVE GVLYTDSDVD IAVLKLVNEV
GIEPVTIGQA RDSDKGSIAV AIGSPLGLFN TVSTGIISNF WEANGVNLIQ ISIPITHGNS
GGALFNESGK LIGITSSGIG EANLNFAISS THIIPICEDI KNIPYNQLNA VPLSSAGGNI
NSITRQAGSS NSNQSSSSGK SLLSSKYRFV NSDKPISNDA TYTSDLQTIY DLALNKYYAK
EDLYRDLDYA FDYILDYGTK YYLEYLEYIL HETYIKEDVE NFNKINESVL EVLNTTGEYI
EFTADEIEII GAGIKNDGTI DGIIVRALFY ENSEPYVRSK FYFRANYDAW SYVDGFLYVG
EVTEK
|
|---|
| |