| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1400 |
|---|
| Symbol | |
|---|
| ID | 4809061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1710973 |
|---|
| End bp | 1712220 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640106823 |
|---|
| Product | glycosyl hydrolase 53 |
|---|
| Protein accession | YP_001037824 |
|---|
| Protein GI | 125973914 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3867] Arabinogalactan endo-1,4-beta-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.195161 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTATCGA AAATTACAAA ACTTACTGTT ATCTTTATCC TCATCCTGTC TGTCACATTT
CTTTCAATGC CCAAAACTTA CACACAAGCG GCTCCAACTT TTGCAAAGGG GGCTGATGTA
AGCTGGCTGC CGGAGATGGA GGCAAACGGC TACAAATTTT ATAATGACGA CGGGATTGAG
CAGGATTGTC TTCAAATTTT AAAAGACCAT GGGATAGACT CAATCAGACT CAGGGTATGG
GTCAATCCTC CAAACGGTTA CTGCAACAAA GAAGAGACAA TTAAGATGGC ATTAAGAGCT
AAAAAAATGG GATTCAGAAT AATGATAAAC TTTCATTACA GTGACTCATG GGCCGACCCG
GGGAAACAAA CAAAACCGGC AGCATGGGCC AAATATGATT TTAACGGCTT GATGAAAGCT
GTATATGACT ATACATATGA TGTCATGAGC GCTTTGAAAG CCAACGGCAT AACTCCCGAG
TGGGTTCAGG TTGGAAATGA AACCAATAAC GGCATGCTGT GGGAAGACGG CAAGGCAACG
AACAGCATGA GGAATTTTGC ATGGCTCATC AACTGCGGTT ATGATGCCGT AAAAGCGGTA
AGTCCTGAAA CTAAAGTTAT AGTTCATATT GCAAATGGAT ATGACAATGC ATTGTACAGA
TGGATATTTG ATGGAATTAC CGCAAACGGT GCAAGATTTG ACGTAATAGG TATGTCGCTG
TATCCTACGG CGTCTGACTG GCCACAATTG ACAAACCAGT GTCTAAACAA TATGAAAGAC
ATGATATCAA GATACGGAAA AGAAATAATG ATATGTGAGA TTGGAATGGA TTACTGGGAG
GCGCAGGCTT GCAAAGACTT TATTACCGAT ATAATTCAAA AGACAAAATC CCTGCCCGAT
AATAAAGGCC TTGGAGTATT CTACTGGGAG CCTCAATGTT ATAACTGGCA GTATTATAAT
AAAGGAGCCT TTGATTTATC CGGAAAACCC ACAATTGCGC TGGATGCGTT TTTGACCTCC
GATACACCGG ATAATCTTAT TTATGGAGAT TTGAACGGTG ACGGACGCGT GAATTCCACG
GACTACACTT TGCTGAAGAG ATATTTGCTT GGCGCTATAC AAACTTTCCC TTATGAAAGG
GGAATTAAGG CTGCGGACCT GAATTTGGAC GGTCGTATCA ATTCGACTGA TTATACTGTG
CTAAAAAGAT ATTTACTCAA TGCCATACCA TCACTTCCTG TAAAATAG
|
|---|
| Protein sequence | MLSKITKLTV IFILILSVTF LSMPKTYTQA APTFAKGADV SWLPEMEANG YKFYNDDGIE
QDCLQILKDH GIDSIRLRVW VNPPNGYCNK EETIKMALRA KKMGFRIMIN FHYSDSWADP
GKQTKPAAWA KYDFNGLMKA VYDYTYDVMS ALKANGITPE WVQVGNETNN GMLWEDGKAT
NSMRNFAWLI NCGYDAVKAV SPETKVIVHI ANGYDNALYR WIFDGITANG ARFDVIGMSL
YPTASDWPQL TNQCLNNMKD MISRYGKEIM ICEIGMDYWE AQACKDFITD IIQKTKSLPD
NKGLGVFYWE PQCYNWQYYN KGAFDLSGKP TIALDAFLTS DTPDNLIYGD LNGDGRVNST
DYTLLKRYLL GAIQTFPYER GIKAADLNLD GRINSTDYTV LKRYLLNAIP SLPVK
|
|---|
| |