Gene Cthe_1288 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_1288 
Symbol 
ID4809540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand
Start bp1566147 
End bp1566833 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content43% 
IMG OID640106711 
Producttwo component transcriptional regulator 
Protein accessionYP_001037713 
Protein GI125973803 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.28008e-09 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAACA AAACCAAGGT GCTTGTAATT GATGATGATG TAAATATTTG TGAGCTCATA 
AGGCTGTATA TGGAAAAGGA AGGTTTTGAG GTCGTAACGG TATACAATGG CAGCAAGGCT
CTGGAAGTAT TCAGAAACGA GGCTCCAAAC ATTGTTATCC TAGATATTAT GCTCCCGGGG
GCGGATGGAT GGCAGGTTTG CAGGGAGATA AGAAAAATCA GCAATATTCC GGTGATTATG
CTTTCGGCCA AAGGGGAGAC TTTTGACAAA GTGCTGGGTT TGGAGCTTGG TGCGGATGAT
TACCTTGTAA AACCTTTCGA ACCGAAGGAA CTCGTGGCAA GAGTGAAAGC GGTGCTCAGA
AGATATGAGC ACAAGGACAG TGATGTCCAA GAGATAGTAT ACCCGAATCT TATTATAAAC
AAGACCAATT ATACCTTGAA AGTAAACGGC AAAGAGATGG AGTTTCCGCC AAAAGAGCTG
GAACTTCTGT ATTTTCTTGC CTCAAACCCC AATAAGGTTT TTACGCGGGA ACAACTTATA
GAGCAGGTCT GGGGCTATGA CTTTTACGGA GATTCCAGGA CCGTGGACGT TCACATAAAG
AGACTTAGGG AAAAGCTTGA CAGTGAAGGA CAAAACTGGC AGCTTAAAAC TGTTTGGGGT
GTCGGATACA AATTTGAGGT GAAATAA
 
Protein sequence
MSNKTKVLVI DDDVNICELI RLYMEKEGFE VVTVYNGSKA LEVFRNEAPN IVILDIMLPG 
ADGWQVCREI RKISNIPVIM LSAKGETFDK VLGLELGADD YLVKPFEPKE LVARVKAVLR
RYEHKDSDVQ EIVYPNLIIN KTNYTLKVNG KEMEFPPKEL ELLYFLASNP NKVFTREQLI
EQVWGYDFYG DSRTVDVHIK RLREKLDSEG QNWQLKTVWG VGYKFEVK