Gene Cthe_1271 details

Gene Information

• Locus tag: Cthe_1271
• ID: 4809776
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: +
• Start bp: 1545824
• End bp: 1547863
• Gene Length: 2040 bp
• Protein Length: 679 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 640106694
• Product: carbohydrate-binding family 6 protein
• Protein accession: YP_001037696
• Protein GI: 125973786
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3507] Beta-xylosidase

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAAA AACTGAAAAA AATAATTAAG TTATGCAGCA TGGTATTCGT TATCGGCATC 
TTAACATTAT TACTGCCTGA AAAAGGGGCT GCCGATTATC CGATTTTCTC ACAGCGTTTT 
ACTGCAGACC CAGCCGCAGT CGTGTACAAC GGAAGACTTT ATATTTATTG TTCCCATGAC 
TCGGATGCCA CACCCGGCCA GTCCACTTAC AACATCCCGG ATATAACCTG TATATCCACA 
GATGATTTGA AAAACTGGAC CGACCATGGA GAAGTGTTTA ATGCAAAAAG AGATTCCAGG 
TGGGCTTCGG TGTCCTGGGC ACCGTCAATT GTCTATCGCA ACAACAAGTT TTATTTGTAT 
TACGGTAACG GAGGAAACGG AATCGGAGTT GCTGTAAGCG ACAGTCCGAC AGGACCTTTC 
AAAGATCCTC TTCCGGGTCC GTTGGTAAGC TGGAATACCC CCGGAGTACA GCCTGCACAA 
AATATGTGGC TGTTTGACCC CGGTGTTTTT GTTGATGATG ACGGACAGGC TTATATGTAC 
TTTGGTGGAA ACGGACAAAA CAATATCAGA GTTATTAAGT TGGGCAATGA TATGATAAGC 
ACGGTAGGTT CAGCTATGAC GATGTCTGCT CCGAGATTTT TCGAGGCAGC ATATATGCAT 
AAGTATAATG GAAAATATTA TTTTTCCTAT GCCAGCGATT TCTCTCAAGG TGCATCTAAG 
ATTGAATATA TGATGAGCGA CAAGCCTACC ACAGGTTTTC AATATAAAGG GGTAATATTG 
CCGCAGCCAC CCGACAACTA TAGTAATAAT AACCATCATG CTATCGTTGA GTATAAAGGC 
AATTGGTATG TTGTGTATCA CAACAGGACT GTGGCAAAAC AGCGTGGACT GGACCCGGTA 
TATCAGAGAA ATGTTTGTAT TGATCAGATG TTTTATAACG CCGACGGTAC CATAAAGCAG 
GTTGTTCCAA CGGTAGATGG CTTGAAACAG CTCAAATATG TAGATCCTTA CACAAAAAAT 
TTAGCTGTAA CCATGCATAA GGAATCCGGT ATTGAGACTG AAGAATGCAG TGAAGGCGGA 
CGTAATGTGG CATTTATTGA AAACGGAGAT TGGATTCAAG TCAAAGGAGT TGATTTCGGA 
AATGTAGGCC CAACCAGTTT TGAAGCCAGA GTCGCCAGTG CTACAAACGG CGGAAACATT 
GAAATAAGAC TGGATAGTCC TACAGGAACT CTGATTGGCA CATGCAAAGT TGAAGGAACC 
GGAGACTGGC AGAAATGGGT AACCAAAACC TGTTCCGTCA GCAAGGTAAC CGGTGTTCAC 
GATTTGTTCT TCAGGTTTAC GGGGGGAAGC GGTTATCTGT TTAATTTCAG CTGGTGGAAA 
TTCAACTCAG ACGCAACCCC AACCCCAACC CCTCCCCCCC AACCTTCAAC TGTACCTGTA 
ACTGAAAGAA GTGCTTTTTC GAAAATAGAA GTGGAAGATT TCAATGACAT TAAGTCTTCC 
ACAATACAAA AAATCGGCAC TCCCAACGGC GGAAGCGGCA TAGGATATAT TGAAAACGGA 
GACTGGCTGG CGTATAAAAA TATTGACTTC GGAAACGGTG CGACCACCTT TAAGGCATTG 
GTTGCAAGTA CCCTTTCTCC AAATATTGAA CTTCGATTAG ACAGCCCGAC GGGAACACTT 
ATAGGAACAT TGAAAGTAGC AGCGACCGGC GGTTTTAACG CATACGAAGA ACAAAGCTGC 
AACATCAGCA AAGTTACAGG AAAACATGAC TTGTATCTTG TATTTTCCGG TGCCGTAAAT 
ATTGACTGGT TTACTTTTGG CGGCAGTAGT GGCATAATTA AACGAGGCGA TACAAACAGC 
GACGGAAAAA TCAACTCGAC AGACGTCACA GCACTCAAGA GACATTTGCT CAGAGTAACC 
CAGCTTACAG GCGATAATCT TGCCAACGCA GATGTCAACG GGGACGGAAA TGTTAACTCT 
ACAGATCTTC TTCTGCTTAA ACGATATATA TTAGGGGAAA TAGAAAATTT CCCGATATAA 

 

Protein sequence

MPKKLKKIIK LCSMVFVIGI LTLLLPEKGA ADYPIFSQRF TADPAAVVYN GRLYIYCSHD 
SDATPGQSTY NIPDITCIST DDLKNWTDHG EVFNAKRDSR WASVSWAPSI VYRNNKFYLY 
YGNGGNGIGV AVSDSPTGPF KDPLPGPLVS WNTPGVQPAQ NMWLFDPGVF VDDDGQAYMY 
FGGNGQNNIR VIKLGNDMIS TVGSAMTMSA PRFFEAAYMH KYNGKYYFSY ASDFSQGASK 
IEYMMSDKPT TGFQYKGVIL PQPPDNYSNN NHHAIVEYKG NWYVVYHNRT VAKQRGLDPV 
YQRNVCIDQM FYNADGTIKQ VVPTVDGLKQ LKYVDPYTKN LAVTMHKESG IETEECSEGG 
RNVAFIENGD WIQVKGVDFG NVGPTSFEAR VASATNGGNI EIRLDSPTGT LIGTCKVEGT 
GDWQKWVTKT CSVSKVTGVH DLFFRFTGGS GYLFNFSWWK FNSDATPTPT PPPQPSTVPV 
TERSAFSKIE VEDFNDIKSS TIQKIGTPNG GSGIGYIENG DWLAYKNIDF GNGATTFKAL 
VASTLSPNIE LRLDSPTGTL IGTLKVAATG GFNAYEEQSC NISKVTGKHD LYLVFSGAVN 
IDWFTFGGSS GIIKRGDTNS DGKINSTDVT ALKRHLLRVT QLTGDNLANA DVNGDGNVNS 
TDLLLLKRYI LGEIENFPI