| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1052 |
|---|
| Symbol | |
|---|
| ID | 4811350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1256707 |
|---|
| End bp | 1257948 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640106474 |
|---|
| Product | competence/damage-inducible protein CinA |
|---|
| Protein accession | YP_001037477 |
|---|
| Protein GI | 125973567 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1058] Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA
[COG1546] Uncharacterized protein (competence- and mitomycin-induced) |
|---|
| TIGRFAM ID | [TIGR00177] molybdenum cofactor synthesis domain
[TIGR00199] competence/damage-inducible protein CinA C-terminal domain
[TIGR00200] competence/damage-inducible protein CinA N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000170345 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCGG AGATATTAGC GGTTGGAACC GAGCTTTTAA TGGGGCAGAT AGCAAATACC
AATGCCCAGT ATATATCCAA AAGGCTCAAT GACATTGGTG TGAATGTGTA TTATCACAGT
GTGGTGGGGG ACAATTCCGT TCGGCTGAAA AAATGTCTTC TTGCAGCTTT GGAAAGGTGC
GACCTTGTTA TTATGACCGG AGGACTCGGC CCCACGCAGG ATGACCTTAC AAAGGAGACT
GTTGCGGAAG TTTTGGGGAA AAAGCTTGTT TTACACGAAG AAAGCCTTGA GAGGATTAAA
ACTTTTTTTA CCAGGATAAA CCGAAAAATG ACGGACAATA ATGTCAAGCA GGCATATCTT
CCGGAAGGGT GCACAGTGGT TGAGAATAAC AGCGGCACAG CCCCGGGCTG CATTATTGAA
GATAAGGGAA AGATTGTGGT AATGCTTCCC GGTCCTCCGC CGGAGATGAT GCCGATGCTT
GATGATACCG TTATTCCTTA CCTTGCGGAA AAATCAGGAT ACAGGATAGT GTCAAAATAT
CTGAGGGTTT TTGGAATAGG GGAATCACAG CTTGAAGAGA TGATTATGGA TTTAGTTGAC
AAACAGGACA GGGTCACCAT AGCAACTTAT GCAAAAGACG GGCAGGTGAC CGTAAGACTT
ACCACAAAAG CCAGGACAGA GGAAGAAGGC TTTCGTGAAA TACTTCCTTT GCAAAATGAG
ATAGCTTCAA GACTCAAAGA GGCATTATAC AGTACGGAAG ATGAAGAGCT GGAATATGTG
GCGGCAAAGA TGCTTATTGA CAACAACATT ACAATAGCAA CTGCCGAATC TTGTACCGGT
GGGCTGATTT CAGCAAGGCT TACCGATGTG CCCGGAATAT CAAAGGTTTT TAACAGAGGT
ATTGTATCTT ACAGCAATGA AGCCAAGATG GAAAACCTCG GGGTTAAGCC TGAGACTTTG
GAAAAGTACG GTGCCGTAAG CAGCCGGACT GCAATGGAGA TGGCTGAAGG TGTAAGGAAA
ATCGCCTCAA CTGATATAGG GCTGGCGGTT ACAGGTATTG CAGGTCCTGA CGGAGGCACT
GATGAAAAAC CGGTGGGATT GGTTTATGTT GCCCTGGCCC ATAGCCTGGG GACGGAGGTA
AGGGAACTTA GGCTTGCCGG GAACAGAAAC AGAATAAGAA ACCTTACAGT GCTTAATGCT
TTTGACATGG TAAGAAGATA TGTAATGAAG CTGAAAGGGT AA
|
|---|
| Protein sequence | MNAEILAVGT ELLMGQIANT NAQYISKRLN DIGVNVYYHS VVGDNSVRLK KCLLAALERC
DLVIMTGGLG PTQDDLTKET VAEVLGKKLV LHEESLERIK TFFTRINRKM TDNNVKQAYL
PEGCTVVENN SGTAPGCIIE DKGKIVVMLP GPPPEMMPML DDTVIPYLAE KSGYRIVSKY
LRVFGIGESQ LEEMIMDLVD KQDRVTIATY AKDGQVTVRL TTKARTEEEG FREILPLQNE
IASRLKEALY STEDEELEYV AAKMLIDNNI TIATAESCTG GLISARLTDV PGISKVFNRG
IVSYSNEAKM ENLGVKPETL EKYGAVSSRT AMEMAEGVRK IASTDIGLAV TGIAGPDGGT
DEKPVGLVYV ALAHSLGTEV RELRLAGNRN RIRNLTVLNA FDMVRRYVMK LKG
|
|---|
| |