| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1048 |
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| Symbol | |
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| ID | 4811346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 1251329 |
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| End bp | 1252864 |
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| Gene Length | 1536 bp |
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| Protein Length | 511 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640106470 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001037473 |
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| Protein GI | 125973563 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATTATAA AGGCACTGAG CAGATTACTG ATTGAGAGGG GAAATTATTT TCCTGTCATC
GACGAAAACG GAAACGTTGT GATAGATGAC AACCGGGCAA TGCTTCACAG GTACGGTCCT
GAAGGTTACG TTGTTGCAGA AATTGTAAGC GGTGATTTGT TGACACCGGA ACAAATAAAA
ACAGGACTTG AAATGGTAAG GTCAAGGCAG GAGCAGATAA AAGAAAGATT CAATACCTAC
TACTTCAAAG TTTTTGTCTT TTCATCGGAT TTGCCTGAGG ATAAACTGGA GATTTTAGCG
TCGGAAAATT ATAACGAAGG AATTAACGGA AATTACCTGT GCTGCATAAG TGTAAATGTT
GAAAAAAAAG AGTTTGCCAA GTATTATGAA TATCCCAGAA TATCCTACGG TATTCATAAT
CAAATTCAAT ATTTTTTCAG CAATGATTTT GACAGTGACT ACGGCAATGT TGATTTTAAA
GAATTGGCGA AGAAAAATGA AAAGGGATAC AAAATTGAGA TAAAAGACAA AAAACCCTGG
GTAACCTATG TTCTCATAGC TGTCAACATT CTGGTCTGGC TTTTGATAGA AATCTATGCG
CGGTCCAAGG GTGTTGATTC GTCAAGTCTG TTGGTGGATT TTGGAGCAAA GGAAAATACT
CATATAATGA TGGGAGAATA TTGGAGGTTT GTGACTCCCA TGTTTTTGCA CAACGGAATT
ACTCATCTTG TTGTAAATTC CTATTCCCTT TATGTCCTCG GAACTACTGT TGAAATGATA
ATGGGAAAAG GCAGGTTTTT GTTTATATAT CTCATGGCCG GCCTTATGGG CAGTATAGTA
AGCTTCATTT TTTCAATAGC GCCGTCAGTA GGGGCGTCAG GAGCAATATT TGGCTTGCTG
GGTGCTCTTA TTTATTATGG GACGGAGCAC CGGGAACTGT TTAAGAAAGG TTTTGGCAGA
GGCATATTAA CGACTCTTCT GATCAATATC GTATATGGTT TGTCAGTTCC CAGAATTGAT
AATTTCGGAC ATTTTGGAGG CCTGTTGGGT GGCTTTTTGG CTTCGGGGGT TGTCGGACTG
CCTTCTTTCC GCAGGTCTTT GAAGAAAAAA ACGGTATTTA TGGTTGCAGC GGCTGTGATT
TTGTCAACGT CGCTTTATTA CGGATTTACC AATACTCAGA ACCAATCCTT AAAGAAGTTG
GAATTAATGA GCGGTTTTCT CAATGAACGA AACTGGGTTG AGAGCGAAAA GCTGGGTGAG
GAAATAATTA AAATGCACCC AAAGAATGAA GCCATATTAT TCAATGCTTT GTGGAATTTA
GCTATGTCTG AAGCCAAGCA GGGAAAATAT GACGAAGCGG TAGAACATGC ACAAATGCTG
ACAGAGGTCG ACCCTGCAAA CGGGCATTTT CTTCTCGGAA TTATATATAA TGATGCAGGA
AATGTTGAAA TGTCAAAAAA AGAGTTGGAG GAAGCCGTAA AAATTGATCC TCGTTTGAGG
AATAAGGTTG AAAGTATTTT GAATACAATT AAATAG
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| Protein sequence | MIIKALSRLL IERGNYFPVI DENGNVVIDD NRAMLHRYGP EGYVVAEIVS GDLLTPEQIK
TGLEMVRSRQ EQIKERFNTY YFKVFVFSSD LPEDKLEILA SENYNEGING NYLCCISVNV
EKKEFAKYYE YPRISYGIHN QIQYFFSNDF DSDYGNVDFK ELAKKNEKGY KIEIKDKKPW
VTYVLIAVNI LVWLLIEIYA RSKGVDSSSL LVDFGAKENT HIMMGEYWRF VTPMFLHNGI
THLVVNSYSL YVLGTTVEMI MGKGRFLFIY LMAGLMGSIV SFIFSIAPSV GASGAIFGLL
GALIYYGTEH RELFKKGFGR GILTTLLINI VYGLSVPRID NFGHFGGLLG GFLASGVVGL
PSFRRSLKKK TVFMVAAAVI LSTSLYYGFT NTQNQSLKKL ELMSGFLNER NWVESEKLGE
EIIKMHPKNE AILFNALWNL AMSEAKQGKY DEAVEHAQML TEVDPANGHF LLGIIYNDAG
NVEMSKKELE EAVKIDPRLR NKVESILNTI K
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