| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_1031 |
|---|
| Symbol | gatB |
|---|
| ID | 4811325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1233155 |
|---|
| End bp | 1234588 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640106449 |
|---|
| Product | aspartyl/glutamyl-tRNA amidotransferase subunit B |
|---|
| Protein accession | YP_001037456 |
|---|
| Protein GI | 125973546 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) |
|---|
| TIGRFAM ID | [TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0403261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTATG AAATAATTGT AGGGTTGGAG GTTCATGTTG AGCTTTCAAC CAAATCAAAA
ATATATTGTT CATGCACCAC GGATTTCGGA GGAGAGCCAA ATACCCACAT TTGTCCTGTC
TGCACCGGTA TGCCGGGAGT GCTTCCGGTT TTGAACAAAA AAGTGGTGGA ATACGCGGTA
AAAACCGGGC TTGCCACAAA CTGCAGCATT GCAAAGTACA GCAAGCAGGA CAGGAAAAAC
TATTTTTATC CCGACCTTCC AAAAGCTTAT CAAATTTCCC AGTACGACCT TCCCCTATGC
CGGGACGGAT ATATTGACAT TGAGGTGGAA GGAAGGACAA AAAGGATTGG GATTACAAGG
ATACATATTG AGGAAGATGC GGGAAAGCTT GTACATGATC AGAATGAAAC GGGAACGTTG
ATTGATTATA ACCGGTGCGG TGTGCCGTTA ATTGAGATTG TCACCGAGCC TGACATGCGT
TCGGCGCAGG AAGCGAGGGC TTTTGTGGAA AGCCTTAGGA ACATACTACG GTACATTGAT
GTTTCCGACT GCAAAATGCA GGAAGGTTCA TTGAGAGTTG ACGTTAATCT TTCGGTAAGA
CCTAAGGGCC AAAAGGAATT TGGGACGAGG ACGGAAATGA AAAATTTAAA TTCCATAAGG
TCAATGGTAA GGGCAATTGA AAGTGAAGCC AAAAGACAGA TTGAGGTTAT TGAAAGTGGC
GGAATTATTG TTCAGGAAAC CAGGAGATGG GATGAACACA AAGGTGTAAG CTGTTCAATG
AGAACTAAAG AGGAGGCCCA CGATTATCGA TATTTTCCGG AACCGGATCT TATGCCGATA
GTGGTGGATG AAGAATGGAA GGAAGAAATA AAAAGAAGTC TTCCCGAGCT TCCTGATGCA
AGAAGAAAAA GGTATGTAAA CGAGTATGGA CTTCCCGGAC ATGATGCTTT CATTCTTACA
AGCTCAAAGG CTCTTGCAGA TTTTTTTGAG GAGGCGGCGG GAAAATGCAA TAATGCAAAA
GCCGTGAGTA ATTTTATACT GGGGGATGTT TCGAGAATCC TTAACGACAA GGGAATGGAA
GCTGAAGACA TACCTTTTCC GGCGGAATAC CTGGCAAAGT TGGTGAAATT GGTTGACCAG
GGAACAATAA GCACAACCAT TGCAAAAAAA GTATTGGAGA TAATGTTTGA ACAAAAAAAG
GATCCGCAGG AGATAGTAAG GGAAGAAGGA CTTGAAGTTG TAAGTGATGA AAAAGCTCTT
GCCGAGGTTG TTAAAAAGGT GATTTCAAAC AATACAAAAT TGGTGGAGGA TTACAAAAAA
GGCAAGGACA AAGTTTTCGG ATTCCTTGTG GGACAGGCTA TGAAAGAGAC TAAGGGGAAA
GCAAATCCCC GGCTTTTAAA CAAGATTTTG AAAGAAGAAC TTGACAAAAT ATAA
|
|---|
| Protein sequence | MEYEIIVGLE VHVELSTKSK IYCSCTTDFG GEPNTHICPV CTGMPGVLPV LNKKVVEYAV
KTGLATNCSI AKYSKQDRKN YFYPDLPKAY QISQYDLPLC RDGYIDIEVE GRTKRIGITR
IHIEEDAGKL VHDQNETGTL IDYNRCGVPL IEIVTEPDMR SAQEARAFVE SLRNILRYID
VSDCKMQEGS LRVDVNLSVR PKGQKEFGTR TEMKNLNSIR SMVRAIESEA KRQIEVIESG
GIIVQETRRW DEHKGVSCSM RTKEEAHDYR YFPEPDLMPI VVDEEWKEEI KRSLPELPDA
RRKRYVNEYG LPGHDAFILT SSKALADFFE EAAGKCNNAK AVSNFILGDV SRILNDKGME
AEDIPFPAEY LAKLVKLVDQ GTISTTIAKK VLEIMFEQKK DPQEIVREEG LEVVSDEKAL
AEVVKKVISN NTKLVEDYKK GKDKVFGFLV GQAMKETKGK ANPRLLNKIL KEELDKI
|
|---|
| |