Gene Cthe_1007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_1007 
Symbol 
ID4811301 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand
Start bp1203392 
End bp1205236 
Gene Length1845 bp 
Protein Length614 aa 
Translation table11 
GC content43% 
IMG OID640106425 
ProductGTP-binding protein TypA 
Protein accessionYP_001037432 
Protein GI125973522 
COG category[T] Signal transduction mechanisms 
COG ID[COG1217] Predicted membrane GTPase involved in stress response 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000478233 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAAAACG CTGGTGAATA TATCAGAGAA AATATCAGAA ATGTCGCTAT AATTGCACAT 
GTTGATCACG GGAAAACAAC CCTTGTGGAC GCAATGCTGA AACAAAGCGG TATATTCAGA
GAAAATGAAC AGGTCCAGGA AAGAGTAATG GACTCAAATG ATCTGGAGAG AGAAAGAGGT
ATTACCATTC TGGCAAAAAA CACTGCCATA ACCTATAAAA ATATCAAAAT TAATATTGTG
GACACACCGG GTCACGCTGA TTTCGGCGGC GAAGTCGAGC GGGTTCTCGG GATGGTCGAC
GGTGTCCTTT TGTTGGTTGA CTCCTTTGAA GGCACAATGC CTCAGACAAG ATTCGTACTT
AGAAAAGCTC TTCAGGCTAA TTTAAAACCC ATAGTCGTCA TAAATAAAAT TGACAGACCC
GAAGCAAGAC CGGTTGAAGT CGTGGATGAG GTCCTTGAGT TGTTCATCGA ACTTGGAGCC
GATGATGAAC AGCTCGATTT TCCTGTTGTA TACGCTTCCG CAAGAGAAGG TTATGCTCTA
TACAACTTGA ATGACGATCC GAAAAACCTT GAGCCGCTGT TTGAAACCTT AATAAATCAC
ATACCGGCTC CCAAAGGATT TATGGACAAA CCTCTTCAGC TTTTGGTATC AAACATAGAC
TATGATGATT ATGTTGGAAG AATAGCTGTG GGAAGAATTG AAAGAGGCAT GATTAAAACA
GGACAACAGG CCGCTTTGTG CAAAAAGGAC GGAAGCATTG AAAATGTCAA AATAAGCCGG
CTCTATGTAT TCAGCGGTCT TAAAAGAATT GAAGCCGATT CTGCAATGAT GGGAGACATT
GTTGCAGTCT CAGGCATCAG CAATATTAAC ATCGGTGAGA CAATTTGTAA TGTTGATGCA
CCAGAACCCT TACCTTTTAT TGAGATAGAA GAACCGACAA TCACCATGAC CTTCAGCGTA
AACAACAGTC CTTTTGCCGG TCGGGAAGGA ACTTTTGTAA CTTCAAGGCA TCTAAGGGAA
AGACTCTTTA AAGAACTGGA AACCAATGTT AGCCTTAGAG TCGAAGAAAC TGATTCCCCT
GACTCCTTTA AAGTATCCGG AAGGGGTGAA CTTCATCTTT CAATCCTGAT TGAAACCATG
AGACGTGAAG GCTACGAGTT TCAGGTTTCC AAGCCCAATG TAATTTTGAA GGAAATCGAC
GGTGTACTGT GTGAACCTGT GGAATATCTG ATTATTGACG TTCCTGAAGA GTTCATGGGC
GTTGTCATGG AAAAACTGGG AAGCCGCAAG GCCGAAATGG TAAACATGCA TTCTTCCCAT
CAGGGATATA TGAGACTGGA ATTTAAAATA CCCTCAAGAG GTCTTATCGG GTACAGGTCG
GAATTTTTGA CTGACACAAA GGGAAATGGT ATAATGAATC ATATATTCCA CGGTTTTGAA
CCTTTCAAGG GAGAAATACC GAAAAGGCAA AGAGGCTCAA TGGTTGCATG GGAAGACGGA
GAAGCTGTAA CGTACGGCCT TTACAATGCC CAGGAAAGGG GTACGTTGTT CATCACGCCC
GGCACAAAGG TATATGAAGG CATGATAGTC GGAGAAAATT CAAGGCCGGA GGATATTGTC
ATAAATGTTT GCAAAAAGAA ACATGTTACC AACATGAGAG CAGCCGGTTC CGATGAAGCT
TTGAGGCTTA CGCCTCCGGT GATACTCAGT CTTGAGCAGT GTCTGGAGTT TATAGAGGAT
GACGAACTGG TGGAAGTCAC ACCAAAAAAC ATACGACTGA GAAAAAAGAT TCTCGACACG
GAGCTTAGGG CAAAAACAAA GGCAAGAAAA AAAGAACAGC CTTGA
 
Protein sequence
MENAGEYIRE NIRNVAIIAH VDHGKTTLVD AMLKQSGIFR ENEQVQERVM DSNDLERERG 
ITILAKNTAI TYKNIKINIV DTPGHADFGG EVERVLGMVD GVLLLVDSFE GTMPQTRFVL
RKALQANLKP IVVINKIDRP EARPVEVVDE VLELFIELGA DDEQLDFPVV YASAREGYAL
YNLNDDPKNL EPLFETLINH IPAPKGFMDK PLQLLVSNID YDDYVGRIAV GRIERGMIKT
GQQAALCKKD GSIENVKISR LYVFSGLKRI EADSAMMGDI VAVSGISNIN IGETICNVDA
PEPLPFIEIE EPTITMTFSV NNSPFAGREG TFVTSRHLRE RLFKELETNV SLRVEETDSP
DSFKVSGRGE LHLSILIETM RREGYEFQVS KPNVILKEID GVLCEPVEYL IIDVPEEFMG
VVMEKLGSRK AEMVNMHSSH QGYMRLEFKI PSRGLIGYRS EFLTDTKGNG IMNHIFHGFE
PFKGEIPKRQ RGSMVAWEDG EAVTYGLYNA QERGTLFITP GTKVYEGMIV GENSRPEDIV
INVCKKKHVT NMRAAGSDEA LRLTPPVILS LEQCLEFIED DELVEVTPKN IRLRKKILDT
ELRAKTKARK KEQP