| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0999 |
|---|
| Symbol | |
|---|
| ID | 4811293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | - |
|---|
| Start bp | 1196978 |
|---|
| End bp | 1198123 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640106417 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_001037424 |
|---|
| Protein GI | 125973514 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000542837 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAACA GGATTTCGAT TCTTGGCTCT ACAGGTTCCA TAGGTGTTCA GACCCTGGAT
GTGGCCAGAA ATTTAAATAT AAAGGTTGAT GGACTGGCGG CAAATAAAAA CATAGATTTG
CTTGAAAAAC AGGCCAGAGA GTTTCAACCG AAGATAGTTG CGGTAAAGGA CGAAGAGAGA
GCGAGAATTT TAAGAGACAG GCTTTCTGAT ACCGACTGCA AAGTGGTGGG CGGTGTTGAA
GGCCTTAAAA TGGTGGCTTC TATTGAAACT GTTGAAACCG TTGTTACTTC TATTGTCGGA
ATTGCCGGCC TTATTCCCAC CATGGAGGCC ATAAAGCATA AAAAAAATAT AGCACTGGCA
AACAAGGAAA CCCTTGTAAC AGCGGGGCAT ATTGTCATGT CCGAGGCTGC CAGAATGGGT
GTTAAGATTC TTCCGGTGGA CAGTGAACAT TCTGCTGTTT TTCAGAGTTT AATGGGTAAT
AATAAAAAAG ATGTGGCAAA AATAATTTTG ACCGCGTCGG GAGGCCCCTT TAGAGGAAGA
AAAAAGGAAG AACTTCGAAA TGTCACGCTC AGGGAAGCAT TAAATCATCC TAACTGGAGC
ATGGGCAGCA AAATAACAAT TGATTCTGCA ACCATGATGA ATAAAGGTTT GGAGGTTATT
GAGGCTCACT GGCTTTTTGA AATACCGCAG GATGATATTG AGGTTTTGGT GCATCCGCAG
AGTATCATTC ATTCAATGGT TGAATACAAA GACGGTTCGA TAATTGCCCA GCTGGGCTCT
CCGGATATGA GGCTTCCGAT ACAGTTTGCC CTGACATATC CGGACCGAAA GCAAAACAAC
TTTTCAAAGC TTGACATTGT CAAGATTGGT AGTCTAACCT TTGAAGCTCC CGACCTTGAG
GCGTTTCCGT GCCTTGGGCT TGCTTTTGAG GCGTTACGGG CCGGTGGTAC CATGCCTGCG
GTGCTGAATG CGGCGAATGA AAAAGCCGTT GGATTGTTTT TGCAGGAGAA AATAAGGTTT
TTGGATATCC CCGAAATTAT AGAAAAAGTA ATGGGAAGAC ATTCAGTAAA ACCGGATCCG
GACATTGACG ATATAATTGA TGTCGATTTG TGGGCAAGGA AAATAGTTGA AGAAATTGTT
AAATAG
|
|---|
| Protein sequence | MVNRISILGS TGSIGVQTLD VARNLNIKVD GLAANKNIDL LEKQAREFQP KIVAVKDEER
ARILRDRLSD TDCKVVGGVE GLKMVASIET VETVVTSIVG IAGLIPTMEA IKHKKNIALA
NKETLVTAGH IVMSEAARMG VKILPVDSEH SAVFQSLMGN NKKDVAKIIL TASGGPFRGR
KKEELRNVTL REALNHPNWS MGSKITIDSA TMMNKGLEVI EAHWLFEIPQ DDIEVLVHPQ
SIIHSMVEYK DGSIIAQLGS PDMRLPIQFA LTYPDRKQNN FSKLDIVKIG SLTFEAPDLE
AFPCLGLAFE ALRAGGTMPA VLNAANEKAV GLFLQEKIRF LDIPEIIEKV MGRHSVKPDP
DIDDIIDVDL WARKIVEEIV K
|
|---|
| |