Gene Cthe_0997 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_0997 
Symbol 
ID4811291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand- 
Start bp1194233 
End bp1195291 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content44% 
IMG OID640106415 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_001037422 
Protein GI125973512 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATACA TCAAAAGAAA GAAAACAAGA AAGGTGCGAG TTGGAGATAT ATATATAGGC 
GGCGACGCAA AAATTACTGT TCAGTCCATG ACAAATACCG ACACAAGGGA CGTTGAGGCT 
ACCGTCAATC AAATAAAAAT GCTTGAGGAT ATCGGCTGTG ACATTATAAG GGTTGCTGTT 
GTGGACCAGG AGGCGGCAGA GGCGATAAAG GAGATAAAAA AGTCCATAAA GATTCCCCTG 
GTGGCTGATA TTCATTTTGA TTATCGGCTT GCCATATCCA GTATGGAAAA CGGAGCAGAC 
AAGATAAGAC TTAATCCGGG AAACATAGGA GACAGGGAAA GAGTAAGAAA GGTTGTTGAG 
GTTGCAAAGT CCAGGCAGAT ACCAATTCGC ATTGGGGTGA ATTCCGGTTC CCTTGAGAAG 
AATGTCATTG AAAAGTACGG CGGAATAACT CCTGAGGCGA TGGTGGAAAG TGCGCTGCAG 
CATGTTCGAA TATTGGAGGA ATTGGATTTT TACGATATCG TAATTTCCCT AAAGGCTTCA 
AGTGTTCCAA TGACCATAGC GGCTTACCGC CTGATGTCTG AAAAAACCGA TTATCCTTTG 
CATATCGGTG TTACCGAAGC GGGAACCGTG TTTAAAGGCA CCATTAAATC CTGTGCCGGA 
TTAGGCTGCC TTTTGGCTGA AGGCATAGGA GACACAATAA GAGTATCGCT TACCGGGGAT 
CCAAAGGAAG AGGTTTTGGT CGGACATGAG CTGTTAAGGG CTTTAGGTAT TGAAAAAGGC 
GGGATTGAGC TTGTTTCCTG CCCTACATGC GGAAGATGTC AGATTGACTT GATTGGAATA 
GCTGAAAAAG TGGAAGAAAG GCTTGAAGGT CTTGATAAAA ATATCAAAGT GGCAATTATG 
GGTTGTGCCG TAAACGGACC GGGTGAAGCT AAGGAAGCGG ATATTGGCAT TGCCGGGGGA 
AAAGGTGAAG TATTGTTGTT TAAAAAGGGA GTTATAGTCC GTAAGATCCC CCAGGAAAGG 
GCAGTGGAAG AACTTATGGA GGAAATACTG AGAATGTAA
 
Protein sequence
MEYIKRKKTR KVRVGDIYIG GDAKITVQSM TNTDTRDVEA TVNQIKMLED IGCDIIRVAV 
VDQEAAEAIK EIKKSIKIPL VADIHFDYRL AISSMENGAD KIRLNPGNIG DRERVRKVVE 
VAKSRQIPIR IGVNSGSLEK NVIEKYGGIT PEAMVESALQ HVRILEELDF YDIVISLKAS 
SVPMTIAAYR LMSEKTDYPL HIGVTEAGTV FKGTIKSCAG LGCLLAEGIG DTIRVSLTGD 
PKEEVLVGHE LLRALGIEKG GIELVSCPTC GRCQIDLIGI AEKVEERLEG LDKNIKVAIM 
GCAVNGPGEA KEADIGIAGG KGEVLLFKKG VIVRKIPQER AVEELMEEIL RM