| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0978 |
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| Symbol | |
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| ID | 4811272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 1168482 |
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| End bp | 1169939 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640106396 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
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| Protein accession | YP_001037403 |
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| Protein GI | 125973493 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
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| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00408283 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTTA AAGACCTGGT AAAAGGACTT AATGTACTTG AAGTTGAAGG CGATATGGAT
GTCGAAATCA AGGATATTGC TTATGATTCC AGAAAAGCAA AAGCAGGTTC TCTCTTTGTC
TGTATAGAAG GCTTTAAGGT GGATGGACAC AAGTTTATTC CCCAGGCAAT TGAGAATGGG
ACCAGAGCTT TTCTGGTTCA AAAAGATGTT GACGTTCCCG ATGACGCGAC GGTTGTCAGG
GTTAAGGATA CAAGATATGC TCTTGCCAGC GTGGCCGACA TTTTTTTCGG GCATCCGTCA
AGCAAGTTTA ATCTTGTGGG CATAACCGGT ACAAAAGGAA AGACTACCAC TACATACATG
ATTAAATCAA TTCTTGAAGC CTTTGGGCAA AAGGTTGGAC TTGTCGGTAC AATAGCAAAT
ATGATAGGAC ACGAAGTTCT TCCGACGGAC CGAACAACTC CGGAAAGTTA CGATCTTCAA
GAACTTTTTT CAGAAATGGT GCAAAAAAAC GTAAACAGTG TTGTGATGGA AGTGTCTTCT
CATGCTCTCG AGCTTCACAG GGTAAGCTGC TGTGAGTATG AAATAGGGGT GTTTACCAAC
CTTTCAAGAG ATCATCTTGA TTTTCATAAA ACTTTTGAAA ATTACCTTAA TGCGAAAATC
AAGCTTTTTG GCATGTGTAA AAAAGGCCTA ATAAATATAG ACAATGAATT TGGACCGAAA
GTGGTGGACA GCGCCAGGTG CGAAGTCTAT ACAATGGGGA TAGACAACAA AGCAGATTTG
AGGGCGGTGG ATATTGTACA TCACCCGGAC AGTGTGGATT TTACGGTTGT TTCCCCTTGG
TTTACCGGGG ATGTCAGAGT GAATATTCCC GGAAAATTCA GTGTATATAA TGCTTTAGCC
GCAATAGGAA CCTGTGCTCT TATGGGAGTT CCCTTTGAAT ATATCAAAAA AGGGTTGGAA
AAGGTAACTG TCCCAGGCAG GGCGGAAGTT CTTGATATCA AAAAAGATTA TACCGTAATG
ATTGACTATG CCCACTCCCC TGACAGTCTT GAAAATATTT TAACCACGGT AAAAGCATAT
GCTCCCGGAC GAGTAGTTTG TGTATTCGGC TGTGGCGGAG ACCGTGACAA AACCAAAAGA
CCGATTATGG GCAGGATATC GGGACAATTG GCGGATTTTA CAATCATAAC TTCGGATAAT
CCCCGGACGG AAGATCCGGA TGCCATAATA AGAGACATTG AAGAAGGAAT TAAACAGACA
GGTGGTTTGT ATACTACGAT TACCGATAGG CGTGAAGCCA TAAAATATGC TTTGATGAAT
GCGAAGCCAA AGGACATAAT TCTCCTTGCG GGTAAGGGAC ATGAGACATA TATAATTCTA
AAAGATAAAA CAATTCATTT TGACGAGAGG GAAGTAGTAA GGGATATATT GAAGGAATTG
GACAGTGGCA ATAATTAA
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| Protein sequence | MKLKDLVKGL NVLEVEGDMD VEIKDIAYDS RKAKAGSLFV CIEGFKVDGH KFIPQAIENG
TRAFLVQKDV DVPDDATVVR VKDTRYALAS VADIFFGHPS SKFNLVGITG TKGKTTTTYM
IKSILEAFGQ KVGLVGTIAN MIGHEVLPTD RTTPESYDLQ ELFSEMVQKN VNSVVMEVSS
HALELHRVSC CEYEIGVFTN LSRDHLDFHK TFENYLNAKI KLFGMCKKGL INIDNEFGPK
VVDSARCEVY TMGIDNKADL RAVDIVHHPD SVDFTVVSPW FTGDVRVNIP GKFSVYNALA
AIGTCALMGV PFEYIKKGLE KVTVPGRAEV LDIKKDYTVM IDYAHSPDSL ENILTTVKAY
APGRVVCVFG CGGDRDKTKR PIMGRISGQL ADFTIITSDN PRTEDPDAII RDIEEGIKQT
GGLYTTITDR REAIKYALMN AKPKDIILLA GKGHETYIIL KDKTIHFDER EVVRDILKEL
DSGNN
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