| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0908 |
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| Symbol | |
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| ID | 4810529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 1084767 |
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| End bp | 1085678 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640106327 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_001037335 |
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| Protein GI | 125973425 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00261324 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGAAA TTATACTTGT TTCCAATGAA AGCGGGATAA GGATTGATGC GTGGCTTTGC
GGAAAGGTCA AAGATTATTC AAGGTCGTAT ATACAAAAGC TTATAAACGA TGGAATGATA
CTTGTAAACG GAAAACCTGT AAAATCAAAC TACAAGATAA AACAAAACGA CGAGATACTG
GCAAGAATAC CGGAGCCTCA AGTTCTTGAT GTGGTGGCGG AGGATATTGA TGTGCCCATA
TTGTACGAGG ATGAGCACAT TATAGTGGTG GACAAGCCCA AGGGCATGGT AGTGCATCCG
GCTGCGGGAA ACTATTCCGG CACTTTGGTA AATGCCCTGC TTAAACATTG CGGCACCAAT
CTTTCCAATA TAAACGGGAT TATAAGACCC GGTATTGTCC ATAGAATTGA CAAGGATACT
TCGGGAGTTT TGGTGGTTGC AAAGAGCAAT GCCGCGCATG AAGGTTTGTC TGAAAAACTT
AAGGATCATG ACATTGAAAG AGTTTATATT GCTGTGGTTC ATGGCATAAT CCGGGAGGAT
TATGGCAAAA TTGACGCTCC CATAGGAAGG CACCCTGTTG ACAGAAAAAA GATGGCTGTG
AACACCAAAA ACGGCAGGCG GGCAGTGACC CGTTTTAAAG TGCTTGAAAG ATTCAAGGAT
GCCACTTATA TTGAGGCGAC TTTGGAAACC GGAAGAACAC ATCAGATACG TGTTCATATG
TCCTACATAG GCTTCCCCAT TATCGGGGAT ACGGTTTATG GAAGGAAAAA TGATATATAC
AACATAAACG GACAGGCTCT TCATGCAAAG AAGCTTGGAT TTGTCCATCC GATAAAGGGA
GAGTATATGG AGTTTGAGTC ACCGCTTCCC GAGTATTTTA AAGAGCTTCT TGAAAAGTTG
AGAAAAAGTT AA
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| Protein sequence | MEEIILVSNE SGIRIDAWLC GKVKDYSRSY IQKLINDGMI LVNGKPVKSN YKIKQNDEIL
ARIPEPQVLD VVAEDIDVPI LYEDEHIIVV DKPKGMVVHP AAGNYSGTLV NALLKHCGTN
LSNINGIIRP GIVHRIDKDT SGVLVVAKSN AAHEGLSEKL KDHDIERVYI AVVHGIIRED
YGKIDAPIGR HPVDRKKMAV NTKNGRRAVT RFKVLERFKD ATYIEATLET GRTHQIRVHM
SYIGFPIIGD TVYGRKNDIY NINGQALHAK KLGFVHPIKG EYMEFESPLP EYFKELLEKL
RKS
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