Gene Cthe_0889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCthe_0889 
Symbol 
ID4810507 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium thermocellum ATCC 27405 
KingdomBacteria 
Replicon accessionNC_009012 
Strand
Start bp1065448 
End bp1066437 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content38% 
IMG OID640106305 
Productputative transmembrane anti-sigma factor 
Protein accessionYP_001037316 
Protein GI125973406 
COG category[K] Transcription 
COG ID[COG5662] Predicted transmembrane transcriptional regulator (anti-sigma factor) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAACT GTGGCGAAAT AATCGAATTG ATGTCTTTAT ATATAGATGG TGAACTGGAC 
AGTGAAACTA AAAGGGAGTT TGAAGAGCAT ATAGAAACTT GTGAAAGCTG TAGAAGTGAG
CTTTACGAAT TGAAAGAAAT TGTGGATGTG TTGGGAGAAG TTGAGGAGGT TGAGCTTCCT
TCAGGATTTA AAGAGCAGCT TCACGAGAAA CTTGTGGCGG AAAAGAAGAA AAATGAATCA
GAGAGCAAAA TTTTGTCTTT CAGGAAAAAG TTTATTGGTT TTGCACCTTC CATTGCCGCC
GGACTTGTTT TGGTTTTTGT TGCCGCAAGC CTGATTATAA CCCGGGGATT GTTTGGCAAT
GTTCCAAGTA CCAACACCGG TGGTTCGATG GGTATTGAAT ACAGCGGAAT GATGGAATCT
GATCAAAAAA ATAATAAAGA TGGTCAGTAC AACGGATTGA AAAACGAGGA AGATTCTCAA
GTAAGCGTTT TATTCAATGA AGAACCCGGA GCAACTCAAA GCCAAAAGTT TTATGACGGA
GCTGAAGATT CTCTCCAAAA GGAAAAATCG GAAGATGCCC GGAAGATTGA AAATTCATCT
TTTTATGAAA TAACTTCTTC TTCAGATGTT CCTGCTTCAG AACAGCCGCA GAAGACTTAC
AGTATTGCTG CAACCGGCAT GACTGTTTAT GATGTGAATA TTACAGTAAA TTCACCGGAT
CTTGAAAAAG ATACGGATAA CATTATTAAT ATTGCCCGTT CGTGCAACGT GGAGATTGAA
GTCGAAATAG AAAAATCCGG TCATAAAAGT GTTGCTCTTT CCGGATTGGA TGAAAATAAA
AATACGCTGA ATTTCAGTAT GGATGCTGCG ACATATGAAA ATTTTATAAG TAAACTAAAA
GAAGAATATG GAAGCAAACT CTCCCTGGAT GAAAAGACGG ATGACAGTGA AAAGACAAAA
AGAGTAGAAA TAACAATATT TAAGGAGTAG
 
Protein sequence
MKNCGEIIEL MSLYIDGELD SETKREFEEH IETCESCRSE LYELKEIVDV LGEVEEVELP 
SGFKEQLHEK LVAEKKKNES ESKILSFRKK FIGFAPSIAA GLVLVFVAAS LIITRGLFGN
VPSTNTGGSM GIEYSGMMES DQKNNKDGQY NGLKNEEDSQ VSVLFNEEPG ATQSQKFYDG
AEDSLQKEKS EDARKIENSS FYEITSSSDV PASEQPQKTY SIAATGMTVY DVNITVNSPD
LEKDTDNIIN IARSCNVEIE VEIEKSGHKS VALSGLDENK NTLNFSMDAA TYENFISKLK
EEYGSKLSLD EKTDDSEKTK RVEITIFKE