| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0854 |
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| Symbol | |
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| ID | 4810472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 1029680 |
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| End bp | 1030576 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 640106270 |
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| Product | shikimate dehydrogenase |
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| Protein accession | YP_001037281 |
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| Protein GI | 125973371 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATCG ATGTCAGGGT AACGGGAAAG ACAAAATTGT TGGGACTTGT AGGAAATCCT
GTTGAGCATT CCATATCACC CCAACTTCAC AATACGTTAA GTTCGCTGCT GGGACTGGAT
ATTGTTTACA TACCTCTGGC AGTTGGAAAA GAAGACCTTG AGACAGTGGT AAAAGCTCTC
AAAGCTTTGG ATTTTATAGG TTTTAACGTT ACAATTCCTT ACAAAAGGGA CATAATGAAA
TATCTTGACG AGAATTCAAA AGAAGCAATA CTCATGGGAG CGGTAAACAC GGTAAAAAAG
ATTGACGGTC GTCTGTACGG TTATAATACC GATGCGGAAG GTTTTTTAAG ATCTTTTAAG
GAAGAAGCCG GTGTGGGCTT TAAAGGCAAA AAGGTTGTAC TTATAGGAGC CGGAGGAGTG
GCCCGGGCAA TTGCCGTTAA AATTGCCTCT GAAGATGCGG AAAAAATCAG TGTTGTAAAC
CGTACCGTCG AGAAATCCGT TGAACTTGCC GAGGTTGTAA ATGAAAATAT AAAAGAAATA
GTCCAGGTGT ACAATTTTGA AGATAAAACT TTCAGAATGG CTTTTGAGGA AAGTGATATT
ATTATTAATA CAACTTCTGT AGGTATGTAT CCTAAAACCC GGGAAACCCC CGTTAAATTC
ACTGAGTGCT TCAACAAAAA TCAAATAGTG TATGATGTGA TCTACAATCC TGAAAAAACA
AAATTTCTCA ATGATGCTGA AAAAAGAGGG GCAAAAATCA TAAATGGCCT TGGAATGCTT
TTCTATCAAG GGATAAGCGC CTATGAAATC TGGACGGGTG TAAAGTTTAC CGAGGATAAA
CTTAAAAGTG TTTATGAATC TTTCAAAAAA TATTTGCAGC TTAAATCAGC CAAATAA
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| Protein sequence | MDIDVRVTGK TKLLGLVGNP VEHSISPQLH NTLSSLLGLD IVYIPLAVGK EDLETVVKAL
KALDFIGFNV TIPYKRDIMK YLDENSKEAI LMGAVNTVKK IDGRLYGYNT DAEGFLRSFK
EEAGVGFKGK KVVLIGAGGV ARAIAVKIAS EDAEKISVVN RTVEKSVELA EVVNENIKEI
VQVYNFEDKT FRMAFEESDI IINTTSVGMY PKTRETPVKF TECFNKNQIV YDVIYNPEKT
KFLNDAEKRG AKIINGLGML FYQGISAYEI WTGVKFTEDK LKSVYESFKK YLQLKSAK
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