| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0853 |
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| Symbol | |
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| ID | 4810471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 1027899 |
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| End bp | 1029584 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640106269 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001037280 |
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| Protein GI | 125973370 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000472298 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAAAC AAAAAAGAAA AGGTCTTGGC GACATTTTAG TGGAAGCCGG GCTTATTTCA
AAAGAGCAGC TGGATAAAGC TTTAAAACTT CAGAAAAAAA CAGGCCAAAA ACTTGGAGTT
TTGCTGGTTT CTGAAGGAAT TGTGACCCAG GAGGACATAA TGAGGGTCCT GGAGGAAAAA
ATAGGTGTTT TACGTGTGGC ATTGGAAGAA TGCAACATTG ATCCCGCTGT TTGCAGCTTA
ATCCCCGAAA AACTTGCCAG AAGGTATGAA TTGATTCCTA TAGCACAAAA AGACGGAGTT
CTTAGGGTTG CCATGAGCGA TCCTTTAAAT GTTTTTGCCA TTGATGATAT TGAGGATTAT
ACAGGTATGA GAGTTGAGCC TGTAGTTGAT TTTGCGTCGT CAATAAAAAA TGCCATTGAC
AAATATTACA GAACACAGCA TGTTTTGGTG GAGCCTGTAA AGGAAAAAGG AATTTTATTT
AAAATTGATG AGGAAACAAT AGAGCTTGAA AGCGTTGAGG CGGAAAATGA ATCTGCCTCA
ATGCTTTTAA ATTCCATAAT AGAGCAGGCG ATAAGAAACG GGTCCGGAGA TATACATATT
GAACCTTTGC AAAATGCATT AAAAATAAGG TTTAGAACCG ACGGACAAAT GCATGAGGTC
ATGAGAACGG AAATTGGCAT GCTAAATGGT GTTTTGGCAA AGATAAAGGC AATTTGCGGT
ATGAATATGA ACGAAAAGGC AGTTCCGCAG GACGGCAGGG TGAAGGTAAG TCTGGACGGA
AGAGATTACA ATCTTAAGGT GTCGATTCTT CCGACCGTTT TTGGAGAGAA AATTGCAATC
CGTATTGTTC ATAAAAAGAC TTCCGTCATT CCAAAAGAGC AGCTGGGAAT TTGTCAGGAG
GACCTCGTAA AATTTGAGAG AATGATAAAA AGTCCTAAAG GATTGGTTTT GATAACAGGT
CCTGAAGGAA GCGGCAAAAC CACAACTTTG TATTCCGCCG TAAGTGAAAT CAACAGTCCG
AATGTACATA TAATTACCAT TGAAGACCCT GTTGAATACG TTATTGAAGG AGTAAACCAG
GTACAGGTCA ACATGAAGAC AGGCCTGACT TATGAAAAAG GTCTAAGTTC AATTTTAGAA
CAGGGACCGG ATGTAATTGT CATTGGGGAC ATAAAGGATG CGAAAACGGC TGAAATAGCT
GTAAAGGCGG CAATGGGAGG GCATCTTGTA CTTGGAGCTT TTTGTGCCAA TGATACTTTG
GACGCAGTGT TAACTCTTGT GGAAATGGGA ATAGATCCGT TTTTTATTGC ATCGTCCCTG
ATAGGGGTAA TTTCTCAAAG GCTTGTGAGA AAAATTTGTC CCAACTGCAT AAAGAAGTAT
GTTGCAACAG ATGAGGAACT TTCACTTCTT GAACTGGACA GACCCGTCGA ACTGTATTCG
GGAAATGGGT GCGCAGAATG TTCCGGTACC GGATACAAAG GGAAATTGGG TGTTTTTGAG
GTGCTGAATG TGGACAAGAG CTTCAGGGAT ATGATGAAGG AAAACTTTGC AAAGGAGAAA
TTGAGAAAAT TTTGTGTTTT AAGGGGAATG AAAACTTTAA AAGAAAATGC AAAACAGCTT
GTTCTTGAGG GAAAAACCAC TGCTTTTGAG ATGTCAAGAA TGCTGTCTTT TGAAGAAGAA
TTATAA
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| Protein sequence | MQKQKRKGLG DILVEAGLIS KEQLDKALKL QKKTGQKLGV LLVSEGIVTQ EDIMRVLEEK
IGVLRVALEE CNIDPAVCSL IPEKLARRYE LIPIAQKDGV LRVAMSDPLN VFAIDDIEDY
TGMRVEPVVD FASSIKNAID KYYRTQHVLV EPVKEKGILF KIDEETIELE SVEAENESAS
MLLNSIIEQA IRNGSGDIHI EPLQNALKIR FRTDGQMHEV MRTEIGMLNG VLAKIKAICG
MNMNEKAVPQ DGRVKVSLDG RDYNLKVSIL PTVFGEKIAI RIVHKKTSVI PKEQLGICQE
DLVKFERMIK SPKGLVLITG PEGSGKTTTL YSAVSEINSP NVHIITIEDP VEYVIEGVNQ
VQVNMKTGLT YEKGLSSILE QGPDVIVIGD IKDAKTAEIA VKAAMGGHLV LGAFCANDTL
DAVLTLVEMG IDPFFIASSL IGVISQRLVR KICPNCIKKY VATDEELSLL ELDRPVELYS
GNGCAECSGT GYKGKLGVFE VLNVDKSFRD MMKENFAKEK LRKFCVLRGM KTLKENAKQL
VLEGKTTAFE MSRMLSFEEE L
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