| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0828 |
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| Symbol | |
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| ID | 4810446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | - |
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| Start bp | 1008397 |
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| End bp | 1010280 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640106245 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001037256 |
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| Protein GI | 125973346 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGACAGTA TTAATTTCCC TGATGATATA AAAAAACTGA ATTTGGAACA GTTAAAGCAA
CTTGCAGGCG AGATTAGGTC TTTTCTTATT GAAAAGGTCT CAAAAACAGG CGGGCATCTT
GCTTCCAACT TGGGAGTCGT AGAGTTGACC CTTGCGCTTC ACAGGGTGTT TAACACTCCG
GAGGATAAAA TTATATGGGA TGTAGGTCAT CAATGCTATG TTCATAAGAT TATCACCGGA
AGAAAAGACA GGTTTGACAC CATAAGAAAG CTTGGCGGAC TTTCCGGTTT TCCAAAATCG
GCGGAAAGTG AGTATGATGC TTTCAATACC GGGCACAGCA GTACTTCCAT ATCTGCAGCC
CTGGGTATTG CAAAAGCAAG GGATTTAAGA AAAGAAAAAT ATTCGGTTGT TGCCGTTATC
GGAGACGGTG CCCTGACCGG AGGAATGGCT TTTGAAGCAT TGAATGATGC GGGAAGGTCA
CCGAATAATC TTATTGTTGT ATTAAATGAT AATGAAATGT CAATTTCGAA AAATGTAGGA
GGGCTTTCAG TTTATTTGAG CAAAATTCGA ACAGAACCCT TCTATTTTAA AGTTAAAGAA
GATATAGACA TTATTTTAAA CAAAATACCG GCAATCGGAA AAAGCGCGGT CAAAGCACTT
GGCAGGGTCA AAGGCACCAT AAAATACATG ATTATGCCGG GAATAGTGTT TGAAGAACTC
GGTTTTAAAT ATTTAGGACC TATTGACGGA CATAATATTG CCGAACTGGA AAACGTTCTT
ACAAGAGCCA AAAACACCAA AGGACCTGTA CTGGTGCATG TATGTACCCA AAAAGGAAGA
GGTTACACTT ACGCGGAAAA AAATCCGGCT GTTTTTCACG GCATCTCGCC CTTTGAGGTT
GAGACGGGGG AGGTTATTGC TAATAAAGTT CCGGGATATT CCGATGTATT TGGAAGTGAA
ATTGTCAGGA TTGCTGAAAA AGAAGAAAGG GTTGTTGCTC TTACGGCTGC AATGCCTCAT
GGAACAGGTC TTATCAAATT TTCAAAGAGA TTTCCGGAAA GGTTTTTTGA CGTTGGCATA
GCCGAGCAAC ATGCGGTAAC TTTTGGTGCC GGGCTTGCAA AAAACGGGAT GATTCCGGTC
ATAGCTCTTT ATTCGTCTTT TCTCCAGAGA GCCTATGACC AGGTAGTGCA TGATGTGGCT
CTTCAAAATC TGCATGTGGT TTTTGCGATA GACAGGGCCG GAATAGTCGG GGAAGACGGG
GAGACACATC AGGGAATTTA TGACATATCT TTTTTAAGAC ATATACCAAA TATGACCATT
CTTGCTCCCT GTGATTATAA TGAGCTTGCC AAAATGCTTG AGTATGCCGT ACTGGAGCAT
AGCGGTCCGA TAGCGATAAG GTACCCGAGA GGAGCAGGAC CTGAAAAGCT TTTTGACACC
CCTGACATAA AGTTGGGACA ATCTCTGCTT ATAAGTGAAG GAAATGATGT TACCATTGCG
GCTGTCGGCA ACAAGGTGGA AGTGGCCATG AAGGTTGCCG AAAAGCTTAA GGAGACAGGT
TTGTCTGCGG ATGTGATTTA TTGCAGATTT ATAAAGCCCC TTGATTCAAA TACCATTATA
AATTCCGTAC TTAAAACAAA AAGACTTGTA ACAATAGAGG ATAATACCGT TGAGGGTGGA
TTTGGAAGCA GAGTTTTGGA AACAATAAAC CAGAAGGGGA TAAATGTCAC TACAAGAATG
TTTGGATATC CGGATGCTTT TATTCCTCAT GGCTCTATCA AAGAACTGGT GCATATGTAC
AGACTGGATC CGGATTCCAT TTTCAATGAT GTTTTAAAAC TGATAAATAA AAGCAAAGTG
AAAGAATTCC GAGCCATAAG ATAA
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| Protein sequence | MDSINFPDDI KKLNLEQLKQ LAGEIRSFLI EKVSKTGGHL ASNLGVVELT LALHRVFNTP
EDKIIWDVGH QCYVHKIITG RKDRFDTIRK LGGLSGFPKS AESEYDAFNT GHSSTSISAA
LGIAKARDLR KEKYSVVAVI GDGALTGGMA FEALNDAGRS PNNLIVVLND NEMSISKNVG
GLSVYLSKIR TEPFYFKVKE DIDIILNKIP AIGKSAVKAL GRVKGTIKYM IMPGIVFEEL
GFKYLGPIDG HNIAELENVL TRAKNTKGPV LVHVCTQKGR GYTYAEKNPA VFHGISPFEV
ETGEVIANKV PGYSDVFGSE IVRIAEKEER VVALTAAMPH GTGLIKFSKR FPERFFDVGI
AEQHAVTFGA GLAKNGMIPV IALYSSFLQR AYDQVVHDVA LQNLHVVFAI DRAGIVGEDG
ETHQGIYDIS FLRHIPNMTI LAPCDYNELA KMLEYAVLEH SGPIAIRYPR GAGPEKLFDT
PDIKLGQSLL ISEGNDVTIA AVGNKVEVAM KVAEKLKETG LSADVIYCRF IKPLDSNTII
NSVLKTKRLV TIEDNTVEGG FGSRVLETIN QKGINVTTRM FGYPDAFIPH GSIKELVHMY
RLDPDSIFND VLKLINKSKV KEFRAIR
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