Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cthe_0714 |
Symbol | |
ID | 4810332 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium thermocellum ATCC 27405 |
Kingdom | Bacteria |
Replicon accession | NC_009012 |
Strand | + |
Start bp | 869041 |
End bp | 871125 |
Gene Length | 2085 bp |
Protein Length | 694 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 640106131 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein |
Protein accession | YP_001037142 |
Protein GI | 125973232 |
COG category | [I] Lipid transport and metabolism [J] Translation, ribosomal structure and biogenesis [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0539] Ribosomal protein S1 [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) [TIGR00717] ribosomal protein S1 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000369991 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGGAGATAA TAGTTGCTAA ATCAGCCGGT TTTTGTTTCG GGGTAAGTAA CGCAGTTAAA ACCGTCAATA ATCTTCTGGA AAATCAAAAA GAGCCCATAT ACACATACGG TCCTATTATT CACAATGCGC AAGTAGTAGA TCTTTTTACT TCCAAAGGTG TTAAAAAAAT TGATGATATT GACGAAGCAG AGCCCAACGG TCATATTGTA ATCAGGGCTC ATGGTGTTAC ACCGGACATT TATAAAAAAA TTTCAGACAA GGGGTTGATT TTGGAAGATG CTACATGTCC ATACGTAAAA AAAATTCACA ACCTTGTAAA GGAGAAAAGT GAGGAAGGCT ACAAGATAAT AATTGTAGGC GACAGGAATC ATCCTGAAGT TATAGGGATA AATGGATGGT GTAACAACCA GGCATATATA GTTGACAGTG TTGACGATGT AGAAAAATTT CCCACAAGCG ACGAAAAAGT TTGCGTAGTT GCACAAACAA CGATAACAAA CGAAAAGTGG CTCGAGGTAA ACACGGCATT AAAAAAGAAA TTCAAAAATA TTTTAAAATT TGATACAATA TGTAGTGCAA CCAGCAGAAG ACAAAACGAA GCAGAAGAAA TAGCAAAAAA TGTTGATATG ATGATTATTA TCGGGGGAAA AAACAGTTCA AACACCCAAA AGCTTTATGA CATATGTAAA AAGCATTGCA ATCTGACGTA TAAAATTGAG ACTTCCGGTG ATTTGCCACC GGTAGACATA AAAAAAATAA AAAAAGTAGG TATTTCTGCC GGAGCTTCTA CGCCGGACTG GGTAATTGAG GAGGTTATTA AAAAAATGAG TGAATTAAAC AAACAAGGAA TGGTCGATAT TTTAGAAAAT GATGGTGAAA TAGATTTCGC CAATGCTTTT GAGAATTCGT TTGTCAGAAT ACATGCAGGA GACACTGTAA AGGGAAAAAT AATTGGCTTT AACAGCAATG AGGTTTTCGT TGACTTGGGT TACAAGGCTG ACGGCATAAT TCCTCTCGAA GAGTACACTG ACGACCCTAA CTTCAATATT GAAAAGGAAG TAAAGATTGG AGAAGAAGTC GAAGTTCTCG TTGAAATGGT CAATGACGGC GAAGGCAACG TAAGACTCTC AAAGAGGAAA GTGGATGCCA TAAAATCTTG GGATGACATA GTTAAAGCCT ATGAAAACAA GACTCCTGTA AACGCTTATG TTGTTGAAGT TGTAAAGGGG GGCGTAATTG CCAGCTACAA GGGCGTAAGA ATATTCGTTC CTGCTTCACA GGTAAGCGAT AGATATGTAA AGGATTTGAA CGAATTCCTG AAGAGAAGCA TAACTGTCAG AATTTTAGAG CTTAATGAAA AAAGACGTAA AGTGGTAGGT TCCGCAAGGG TGATTATCGA AGAGGAAAAG GAAGCTCTTG CCAACAGGAC ATGGAACAGC ATGGAAGTTG GAAAAGTATT CAAAGGTACT GTAAAAAGTC TTACTGATTT CGGTGCTTTT GTTGATATAG GCGGAGTTGA CGGACTTATC CATATTTCAG AACTTTCATG GACAAGAGTC AAACATCCGT CTGAAGTATT AAAAGTCGGA GATGAAGTTG AAGTAACAGT TTTGGAGTTT GACAAAGAAA AGAAAAAAGT ATCTTTGGGA TATAGAAAGA TGGAAGACAA TCCATGGTAT AAAATAGAAG AAAAATACAA AGTTGGTGAT GTTGTCAAGG TAACCGTTCT CCGTTTTGCT CCCTTTGGTG CTTTTGTTGA GCTGGAAAAA GGTGTGGACG GATTGGTTCA CATATCCCAG ATATCTTCAA AGAGACTGGC AAAAGTTGAA GATGCTCTTG AGATTGGTAT GAAAGTTGAC GCAAAAATAA TTGAAGTAGA CGGCGAAAAC AAGAAAATCA GCCTTAGTAT TAAAGAGGTT ATGCCGATAG ATCCTCCTTC ATCAAAGAGT GAATCCAAAG CAAAGGACGG ATCCGAAGCA AAAGAAACCT CTGCCAATAC TGAAGAGGAA GCTGAACCGA CAGAGCATAG GGAAGACATG AACGTAACAG TTGAAGATTT GGTATCAAAA ACAACGCAAT CTTAA
|
Protein sequence | MEIIVAKSAG FCFGVSNAVK TVNNLLENQK EPIYTYGPII HNAQVVDLFT SKGVKKIDDI DEAEPNGHIV IRAHGVTPDI YKKISDKGLI LEDATCPYVK KIHNLVKEKS EEGYKIIIVG DRNHPEVIGI NGWCNNQAYI VDSVDDVEKF PTSDEKVCVV AQTTITNEKW LEVNTALKKK FKNILKFDTI CSATSRRQNE AEEIAKNVDM MIIIGGKNSS NTQKLYDICK KHCNLTYKIE TSGDLPPVDI KKIKKVGISA GASTPDWVIE EVIKKMSELN KQGMVDILEN DGEIDFANAF ENSFVRIHAG DTVKGKIIGF NSNEVFVDLG YKADGIIPLE EYTDDPNFNI EKEVKIGEEV EVLVEMVNDG EGNVRLSKRK VDAIKSWDDI VKAYENKTPV NAYVVEVVKG GVIASYKGVR IFVPASQVSD RYVKDLNEFL KRSITVRILE LNEKRRKVVG SARVIIEEEK EALANRTWNS MEVGKVFKGT VKSLTDFGAF VDIGGVDGLI HISELSWTRV KHPSEVLKVG DEVEVTVLEF DKEKKKVSLG YRKMEDNPWY KIEEKYKVGD VVKVTVLRFA PFGAFVELEK GVDGLVHISQ ISSKRLAKVE DALEIGMKVD AKIIEVDGEN KKISLSIKEV MPIDPPSSKS ESKAKDGSEA KETSANTEEE AEPTEHREDM NVTVEDLVSK TTQS
|
| |