Gene Cthe_0567 details

Gene Information

• Locus tag: Cthe_0567
• Symbol: def
• ID: 4808242
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: +
• Start bp: 695212
• End bp: 695724
• Gene Length: 513 bp
• Protein Length: 170 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 640105981
• Product: peptide deformylase
• Protein accession: YP_001036996
• Protein GI: 125973086
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0000000525099
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGTAA GATTTATCAG AGAAGACGGA GACGAAATAT TAAGGAAAGT ATCAAAGAAA 
GTTGATGTTA TTGATGAAAG AATAAAAACA CTGCTTGATG ATATGGCGGA AACAATGTAT 
GCTGCCAACG GTGTTGGCCT TGCAGCGCCA CAGGTGGGAG TTTTAAAAAG AGTGGTTGTA 
ATTGACGTCG GAGACGGACT GATGGAACTT ATAAACCCTG AGATAGTGGA GCAGGAAGGA 
GAACAGATAG ATATAGAAGG TTGTCTTAGC ATACCCGGAG TTGCCGGAGA GGTAAAAAGA 
CCGGCAAGGG TTGTTGTTGA AGCTTTAAAT CGCGAAGGCG AAAAAATAAC GGTAGAAGGT 
AAAGAACTTC TTGCTGTTGC ATTGTGTCAT GAGATTGACC ACCTTGACGG TATTTTGTTT 
ACGGACAAAG TTATACGCTT TATTGATGAG GATGAAATGG AAAGAAGAAG AGAAAATAAA 
CGAAGAAACA AAATAAGACA AAATAAAGGA TAA 

 

Protein sequence

MAVRFIREDG DEILRKVSKK VDVIDERIKT LLDDMAETMY AANGVGLAAP QVGVLKRVVV 
IDVGDGLMEL INPEIVEQEG EQIDIEGCLS IPGVAGEVKR PARVVVEALN REGEKITVEG 
KELLAVALCH EIDHLDGILF TDKVIRFIDE DEMERRRENK RRNKIRQNKG