| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0557 |
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| Symbol | |
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| ID | 4808232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | + |
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| Start bp | 684019 |
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| End bp | 684789 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 640105971 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_001036986 |
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| Protein GI | 125973076 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | [TIGR02764] polysaccharide deacetylase family sporulation protein PdaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTTT ATGTTGTGAA AGTAAATAAT CTCATAAAAT ATGCTTTTTT AGCAGTTATT
GTATTGGCTG TCTCATTCTT TGTTTATTTT TCCCGGGAAG ACGTTGTAGG TGCATTTCAA
CAAAAAAGAG AAATTCCCAT TTATTCTGTG GATTATCCCG AAAAGAAAGT TGCCCTTACC
TTTGACTGCG CCTGGGGGAG TGAGGATATA CCGGACATTC TGAATACCCT GAGGGAGCAT
GATGTTAAGG CAACCTTTTT TATTATTGGG GTGTGGGCTG AGAAAAATCC CGATGAGGTA
AAAATGATTG CGGATGAGGG ACACGACGTG GCAAACCATT CCTATTCCCA TTATAAAATG
TCGAGCCTTA ACAGTTCGGC GATAAAAAGT GAAATATTAA AATGTGACAG AGTATTGAAG
AAAATCACGG GAAAAGATGT GGAACTGTTC AGACCACCCT ATGGCGATTA CAACAATGAC
GTTGTGAGAA TTGCAAGAGA ACTGAATCAC TATACAATAC AATGGGATGT TGACTCTTTG
GACTGGAAGC CCGGAATTAC TGCTGAAGAA ATAAAAAACC GGGTGCTTAA AAATGTAAAC
AAAGGCTCAA TCATACTGTT TCATAATGAT ACAAAACATA CAGCCAAAAT ACTTCCCGAA
ATAATAACTT CGCTTAAGCA GAAAGGATAT GGGTTTATTC CTGTTTCCCA AATGATTATG
AGGGAAAATT ATGAAATTGA TTACAGGGGA AGACAGATAA AAAAACAGTA A
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| Protein sequence | MKFYVVKVNN LIKYAFLAVI VLAVSFFVYF SREDVVGAFQ QKREIPIYSV DYPEKKVALT
FDCAWGSEDI PDILNTLREH DVKATFFIIG VWAEKNPDEV KMIADEGHDV ANHSYSHYKM
SSLNSSAIKS EILKCDRVLK KITGKDVELF RPPYGDYNND VVRIARELNH YTIQWDVDSL
DWKPGITAEE IKNRVLKNVN KGSIILFHND TKHTAKILPE IITSLKQKGY GFIPVSQMIM
RENYEIDYRG RQIKKQ
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