Gene Cthe_0539 details

Gene Information

• Locus tag: Cthe_0539
• ID: 4808288
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium thermocellum ATCC 27405
• Kingdom: Bacteria
• Replicon accession: NC_009012
• Strand: +
• Start bp: 657907
• End bp: 658590
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640105953
• Product: ABC transporter related protein
• Protein accession: YP_001036968
• Protein GI: 125973058
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.0632704
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGATAT TGAGGGTTGA AAACGTGACA AAAACGTACG GCACCGGAGA GAACATGGTC 
AGGGCATTGG ACGGTGTTTC ATTTTCGGTA AAAAAGGGTG AATTCATTGC AATTGTAGGG 
CCATCGGGTT CGGGCAAATC CACACTTTTG CATATTTTAG GCGGAGTGGA CAAACCTACA 
AGCGGCAAGG TTTTTATGGA CGGCAAGGAT GTTTATGCTC AAAATGACGA GCAGCTTGCA 
ATTTTTCGCC GCCGGCAGGT GGGGCTCATA TATCAGTTTT ACAACCTTAT ACCCGTGTTA 
AATGTAGTGG AGAATATTAC ACTTCCGGTA CTTATGGACG GAAGAAAAGT GAACAAAGAA 
CGACTGGAAG AGTTGATTGA GACTTTGAAT CTTAAAGGAA GGGAAAATCA TTTGCCCAAT 
CAGCTGTCGG GAGGCCAGCA GCAAAGGGTG TCCATTGGCA GGGCATTGAT AAATGCTCCT 
TCGGTGGTGC TTGCGGACGA ACCCACGGGA AACCTGGATT CGAAAAACAG CCAGGAAATT 
GTGGAACTTT TGAAACTCTC CAATAAAAAA TACAATCAAA CCTTGATTGT TATTACCCAT 
GACGAAAATA TTGCGTTGCA GGCAAACCGA GTAATTGCCA TTGAGGACGG GAGGATCATT 
CGTGACGAGG TGATTCGGCA ATGA 

 

Protein sequence

MEILRVENVT KTYGTGENMV RALDGVSFSV KKGEFIAIVG PSGSGKSTLL HILGGVDKPT 
SGKVFMDGKD VYAQNDEQLA IFRRRQVGLI YQFYNLIPVL NVVENITLPV LMDGRKVNKE 
RLEELIETLN LKGRENHLPN QLSGGQQQRV SIGRALINAP SVVLADEPTG NLDSKNSQEI 
VELLKLSNKK YNQTLIVITH DENIALQANR VIAIEDGRII RDEVIRQ