| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0478 |
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| Symbol | |
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| ID | 4808331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | + |
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| Start bp | 592016 |
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| End bp | 593236 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640105892 |
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| Product | flagellar motor switch protein |
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| Protein accession | YP_001036909 |
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| Protein GI | 125972999 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1776] Chemotaxis protein CheC, inhibitor of MCP methylation
[COG1886] Flagellar motor switch/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02480] flagellar motor switch protein FliN |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000894996 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGGATA TGTTGTCTCA GGCTGAAATA GATGCTTTGC TAAATGGTAG CTCATCGGAA
GGGAATGAAG AAAACAGCGC AAATGAGGAG CTTACGTCAC AGGAAATTGA TGCATTGGGT
GAAATAGGCA ACATAAGTAT GGGAACCTCT GCTACTACTC TTAACTCGTT GTTGGGACAA
AGGGTAGTGA TAACAACTCC CAAAGTATCA GTATGTACAT GGGAAGAATT AGCGAAAGAA
TATCACAGTT CTTATGTGGC TGTAAAAGTC GAATATACTG AAGGACTTGA CGGTATGAAT
CTTCTTCTTT TAAAAGAGGA CGATGCCAAG GTGATTACCG ATTTGATGAT GGGCGGAGAC
GGCAGTAATA AAGAGGGAGA ATTGACGGAT TTGCACTTAA GTGCAATCAG TGAGGCAATG
AATCAAATGA TTGGTTCTGC AGCCACTTCA ATGTCTTCGA TGTTTAACAA GAGAATAGAT
ATTTCGCCTC CGAAAGTGTT TCCCATGACA TTGGACGCTG CCGTTCCTGA AGCGGAATTT
CCAAGGGGCG ACAAGATAGT AAAAGTTGCA TTTAAAATGG TTATCGGAGA ATTGATTGAC
AGTCAAATTA TGCAGCTTTT GCCTATCGAT TTTGCCAAAA AAATGGTTAG TAATATTATG
AATTCCAAAC CCGAGGACAA TCAGGTAATA GAAGAGGTTG CTGCATCAGC TGTTCAGGAA
CCTGTTGCCG GACAGCATAA TGAGCAGTAT TATCATGCTC AACCGTCTCA GCAGCCGTAT
CAACAGCCGC CTCAGCAGCC GTATCAACAA CCGTATCAAC AACCATACCA TCAACCGTAT
CAGCAACAAT ATCAGCAGTA TTACCAGCCG TATGAGCAGC CACCCAGACA AAATGATGGA
TACCGCAATC CTATAAATGT GCAACCTGCA CAGTTTGAAG CTTTTGATGA CGGTTCGAAA
ATCTCAATTG ACAAGAAAAA CATCGGGCTT ATCATGGATG TGCCGCTTCA GGTTACAGTT
GAGCTTGGAC GAACCAATAA ACTTATTAAA GATATTTTGG AATTCGGACC TGGTTCAATA
ATTGAGCTTG ACAAGCTTGC AGGTGAACCC GTGGATATTC TGGTAAACGG GAAAGTAATT
GCCATAGGTG AAGTTGTGGT TATAGATGAA AGTTTTGGTG TCAGGATTAC AGACATACTT
CATCCGTCGA AAAGGCTTTA A
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| Protein sequence | MEDMLSQAEI DALLNGSSSE GNEENSANEE LTSQEIDALG EIGNISMGTS ATTLNSLLGQ
RVVITTPKVS VCTWEELAKE YHSSYVAVKV EYTEGLDGMN LLLLKEDDAK VITDLMMGGD
GSNKEGELTD LHLSAISEAM NQMIGSAATS MSSMFNKRID ISPPKVFPMT LDAAVPEAEF
PRGDKIVKVA FKMVIGELID SQIMQLLPID FAKKMVSNIM NSKPEDNQVI EEVAASAVQE
PVAGQHNEQY YHAQPSQQPY QQPPQQPYQQ PYQQPYHQPY QQQYQQYYQP YEQPPRQNDG
YRNPINVQPA QFEAFDDGSK ISIDKKNIGL IMDVPLQVTV ELGRTNKLIK DILEFGPGSI
IELDKLAGEP VDILVNGKVI AIGEVVVIDE SFGVRITDIL HPSKRL
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