| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0460 |
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| Symbol | |
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| ID | 4808388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium thermocellum ATCC 27405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009012 |
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| Strand | + |
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| Start bp | 574145 |
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| End bp | 576253 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640105874 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001036891 |
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| Protein GI | 125972981 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.159815 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGACA AATTGATTAT TGTTGAGTCT CCCGCAAAGG CACATACTAT TGGGAAATTC
TTGGGAAAAG ACTATAAGAT AGTTGCTTCT GTCGGACATG TGAGAGACCT TCCCAAAAGT
CAGATGGGGG TCGATATAGA GAATGATTTT ACTCCCAAGT ACATTACAAT AAGAGGTAAG
GGTGAAATAA TTTCAAAACT TAAAAAAGAA GCAAAGAACG CAAGCACTAT CTATCTTGCA
ACCGACCCTG ACCGTGAGGG TGAGGCTATT TCGTGGCATT TGGCTACTTT GCTTAACATA
GATAAAAATG AGAAATGCAG GATAACTTTT AATGAGATAA CCAAAAATGC TGTTAAAAAC
GCCATAAAAT CACCCAGGGA AATCAACATG GACCTGGTTG ATGCCCAACA GGCAAGAAGG
GTATTGGACA GGATTGTGGG ATACAAGATA AGTCCCCTGC TTTGGAAAAA AGTTAAAAAA
GGATTGAGTG CAGGAAGGGT TCAGTCGGTT GCGACAAGGC TTATCTGCGA CAGGGAAGAA
GAAATTGAAA AGTTTGTACC TGAGGAATAC TGGACCATAA CTGCAAAACT CTTAAAAGGT
GGAGTAAAGG CTCCTTTTGA GGCCAAATTT TACGGTCTGG ACAATAAAAA GACTGAACTT
AAAAGCGAGG AAGAAGTAAA TAAAGTTCTG GATGAGATAA AAGACGCCGT GTTTGTGGTT
CAGAAAGTGA AAAAAGGGGA GAAAAAGAAA AATCCTAACG CACCGTTTAC CACCAGTACG
ATGCAGCAGG AAGCTTCCAG GAAACTGGGA TTTTCCACAA AAAAGACAAT GATGGTGGCA
CAGCAGCTCT ATGAAGGAAT TGAAGTAAAA GGTGTCGGGG CTGTGGGTCT TGTCACTTAT
ATTCGTACCG ATTCCACGAG AATTTCCGAG GAGGCGCAAA ATCAAGCTGC AAAGTATATT
AAAGAAAAGT TTGGTGAAAG TTATCTTCCC AAAGAAAAAA ATGTTTATAA AAACAAATCT
GCCTCTCAGG ATGCCCATGA GTGTATAAGA CCGACATCGG TTGAAATGGA TCCTGAGTCT
GTTAAGGATT CACTTACCAA GGAGCAGTAC CGTCTGTATA AGCTTATATG GGATAGGTTC
GTGGCCAGTC AGATGGCGCC GGCCGTATAC GACACTATAA ATGCGGATAT TGAAGCCGGA
AAATATCTTT TCAAGGCAAG CGGCTCCACT GTAAAGTTTC CTGGATTTAC GGTCCTGTAT
CAGGAAGACA AGGACGATGA AACGGAAGAA GGAGAGGTCA TTGTTCCGGA GCTTGCGGAA
GGGGAAAGCT TAAAGCTTAA AAAGCTTGAA CCCAGACAAC ATTTCACCCA GCCGCCGCCA
AGGTATACGG AAGCAAGCCT GGTTAAGGCT TTGGAAGAAA AAGGCATAGG AAGACCGAGT
ACTTACGCCC CCATCATTAC AACCATTTTG GCCCGGGGTT ATGTGGTGAA GGAAGGCAAG
ACATTGGTTC CGACCGAGCT CGGGAAAATC GTTACGGATA TTATGAAAAA CTATTTTCAG
GATATCGTGG ATGTAGAGTT TACGGCTCAA ATGGAGAAAA CGCTTGATGA AGTGGAAGAG
GGCGAAAAAA GATGGGTAGA TGTCATGAGA AGCTTTTACT CCCAATTTGT TGATGTTCTG
AAAAATGCGG AGGAAAAGAT AGGCAATATT GAAGTTCCCG AGGAAGTAAC CGATGAGATT
TGTGAAAAGT GCGGAAGAAA CATGGTAATT AAAGTTGGAA AGAAAGGAAG ATTTTTGGCG
TGTCCCGGTT TTCCGGAGTG CAGAAACGCC AAGCCTATTT TGGAGGATGC GGGTGTAACC
TGTCCTAAAT GCGGCGGTAA AGTGTACATT AAAAAGACGC GGAAAGGCAG GAAATATCTT
GGTTGTGAGA ATAACAACAG CGATCCCAAA TGCGATTTTA TGACTTGGGA TATGCCGTCA
AAAGAAAACT GCCCGAAATG CGGAAGTTTT TTGCTTAAAA AGTATTCCGG CAGGAAGGTA
CAGCTAAAAT GCAGCAATGA AAACTGTGAT TATGTAAAAA CGGGGAAAGA AAAAAAGGAA
GATGAATAA
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| Protein sequence | MADKLIIVES PAKAHTIGKF LGKDYKIVAS VGHVRDLPKS QMGVDIENDF TPKYITIRGK
GEIISKLKKE AKNASTIYLA TDPDREGEAI SWHLATLLNI DKNEKCRITF NEITKNAVKN
AIKSPREINM DLVDAQQARR VLDRIVGYKI SPLLWKKVKK GLSAGRVQSV ATRLICDREE
EIEKFVPEEY WTITAKLLKG GVKAPFEAKF YGLDNKKTEL KSEEEVNKVL DEIKDAVFVV
QKVKKGEKKK NPNAPFTTST MQQEASRKLG FSTKKTMMVA QQLYEGIEVK GVGAVGLVTY
IRTDSTRISE EAQNQAAKYI KEKFGESYLP KEKNVYKNKS ASQDAHECIR PTSVEMDPES
VKDSLTKEQY RLYKLIWDRF VASQMAPAVY DTINADIEAG KYLFKASGST VKFPGFTVLY
QEDKDDETEE GEVIVPELAE GESLKLKKLE PRQHFTQPPP RYTEASLVKA LEEKGIGRPS
TYAPIITTIL ARGYVVKEGK TLVPTELGKI VTDIMKNYFQ DIVDVEFTAQ MEKTLDEVEE
GEKRWVDVMR SFYSQFVDVL KNAEEKIGNI EVPEEVTDEI CEKCGRNMVI KVGKKGRFLA
CPGFPECRNA KPILEDAGVT CPKCGGKVYI KKTRKGRKYL GCENNNSDPK CDFMTWDMPS
KENCPKCGSF LLKKYSGRKV QLKCSNENCD YVKTGKEKKE DE
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