| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0189 |
|---|
| Symbol | |
|---|
| ID | 4808677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 227540 |
|---|
| End bp | 228139 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640105600 |
|---|
| Product | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase |
|---|
| Protein accession | YP_001036623 |
|---|
| Protein GI | 125972713 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0127] Xanthosine triphosphate pyrophosphatase |
|---|
| TIGRFAM ID | [TIGR00042] non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00497263 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAAT TTGTAATTGC AACGAAGAAC AAGGGCAAGC TTAAGGAAAT ACAGGAAATA
TTGGACGGAC TTGATTTTGA AGTTGTATCA ATGGAGGAAA TGGGCATAAC CAAGGATATT
GAAGAGTCCG GAAGCACTTT CGAGGAAAAT GCCCTTATCA AAGCGAGGGA AGTTTATAAA
GCTTGCGGCG AGATAGTGAT GGCCGATGAT TCGGGCCTGG AAGTGGACTA TTTAAACGGT
GCTCCCGGTA TTTATTCTTC AAGATTTGCA GGAGAAGGGG CAAGTGACGA GGACAGGAAC
AACAAGCTTC TCTCGCTTTT AAAAGATGTG CCCTTCGAGC AAAGAAAAGC AAGGTTTGTG
TGCGTTATTG CGGTGATACT TTCCGATGAA GAATATTTTA CGGTAAGGGG AACCGTTGAA
GGTTACATAG GCTTTGAACC TAAAGGCGAC AATGGCTTTG GGTATGACCC TTTGTTTTTT
ATTCCGGAAT ATAATATGAC GGCGGCACAA ATGAAGCCGT CCAAAAAGCA TGAAATAAGC
CATCGGGGAA AAGCCATGAG AATGATGCTT GAAGAGCTTA AAAAGAGGTT GGACCTGTAA
|
|---|
| Protein sequence | MRKFVIATKN KGKLKEIQEI LDGLDFEVVS MEEMGITKDI EESGSTFEEN ALIKAREVYK
ACGEIVMADD SGLEVDYLNG APGIYSSRFA GEGASDEDRN NKLLSLLKDV PFEQRKARFV
CVIAVILSDE EYFTVRGTVE GYIGFEPKGD NGFGYDPLFF IPEYNMTAAQ MKPSKKHEIS
HRGKAMRMML EELKKRLDL
|
|---|
| |