| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0184 |
|---|
| Symbol | |
|---|
| ID | 4808672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 219986 |
|---|
| End bp | 221089 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640105595 |
|---|
| Product | type IV pilus assembly protein PilM |
|---|
| Protein accession | YP_001036618 |
|---|
| Protein GI | 125972708 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
|---|
| TIGRFAM ID | [TIGR01174] cell division protein FtsA
[TIGR01175] type IV pilus assembly protein PilM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000394027 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTAC CATTTTTGAG AAATAATTAT CTAAGCATTG ATATTGGTTT TAGGAATATC
AAAGTTGTTG AAGTGGCAGT TAACAGGAAC AACGAAGTCT ACATCAACAA TTTTGGAATA
GCTCCTACTC CGTTAAATTG CATAAAAAAC GGCGTTATCA AAAATGTGGA TGCGGTATCC
AGCGAGATTA GCAGGATAAT CCGGGAGAAC AAGATGAAGG TAAAGAAGTC CAAGATTGTT
ATGTCCGGTA CCAGCATAAT TTCGAGAGTG TTTATGATTG AAAAAGTACC GGGCAAGAGT
ATTGATGAGC TTGTTCAGGA AGCGATAATG TCCAACTTGC CTATCAACCC GGATGAACAC
AAAATTGACT ACAAGATTTT GCAGGAGTTG AAAGAAGATA ACGTCGAAAA GGTTAAAGTT
TTTGTAACTG CAGTAAGAAA AAGCATAATA AACAGTTACA TTGATGTTCT GTTTGAACTT
GGTTTAAAAC CTGTTTCAGT TGATATACCG GCAAACAGTA CGGCAAAATT TTTCAACAGA
GATATAAAGG TCAGCATTGA CAATGTTAAG TTTGTAAACC CCAATAGAAG TCAGTTGAAC
AAAGATGCTT TTGCAGTTAT AGATTTTGGT TCGGAAACCA CGATTATAAA TATTCTGAGA
AACAAAATAC TGGAGTTTAA CAAAGTAATA TTAAGCGGAA GCAGCAATCT GGACGAGGCA
ATAGCTAAAA ATATGCGCAA GTCCATAATT GAAGCTGAAA GGCTTAAGAA ATTGTATGGC
ATTTCGGTTC CGCCGCACCA TTCCACCAAC GAGGAGCATA TGAAGGTTTA CAGGATTTTA
AAGGAAGTGG TTGATAAGCT TTTGAACCAG ATTTACATGT GCCTTACTTT TTATGAAGCT
CGTTGCTATG GTGTAAAAGT CGGAAAGATA TTTATAATAG GCGGGGGTTC ACTCTTAAAA
GGTTTGGCCG ACTATATGGA ACAAGTGCTG CAGGTACCTG TTTATCCTGT GGGACTTTTG
GATATAGACG GTATTGATAT AAACAAAAAT CTAAACAGCG ACAAGCTGAA TTTCCTTGTG
AATGCCGTAG GAATAACGCT GTAA
|
|---|
| Protein sequence | MLLPFLRNNY LSIDIGFRNI KVVEVAVNRN NEVYINNFGI APTPLNCIKN GVIKNVDAVS
SEISRIIREN KMKVKKSKIV MSGTSIISRV FMIEKVPGKS IDELVQEAIM SNLPINPDEH
KIDYKILQEL KEDNVEKVKV FVTAVRKSII NSYIDVLFEL GLKPVSVDIP ANSTAKFFNR
DIKVSIDNVK FVNPNRSQLN KDAFAVIDFG SETTIINILR NKILEFNKVI LSGSSNLDEA
IAKNMRKSII EAERLKKLYG ISVPPHHSTN EEHMKVYRIL KEVVDKLLNQ IYMCLTFYEA
RCYGVKVGKI FIIGGGSLLK GLADYMEQVL QVPVYPVGLL DIDGIDINKN LNSDKLNFLV
NAVGITL
|
|---|
| |