| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cthe_0120 |
|---|
| Symbol | |
|---|
| ID | 4808678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium thermocellum ATCC 27405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009012 |
|---|
| Strand | + |
|---|
| Start bp | 151334 |
|---|
| End bp | 152074 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640105531 |
|---|
| Product | RNA polymerase, sigma 28 subunit |
|---|
| Protein accession | YP_001036554 |
|---|
| Protein GI | 125972644 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02885] RNA polymerase sigma-F factor
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02980] RNA polymerase sigma-70 factor, sigma-B/F/G subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAAT TGCATGAAAA GGAAACTCTG GAATTAATAG CAGCTGCCAA GGCAGGAGAC
AAAGATGCCC AATCCCTGTT GGTGGAAAAA AATGTTGGTC TTGTATGGAG TATCGTGCGA
AGATTTCAAA ACAGAGGATA TGAAGCTGAA GATATTTTCC AAATCGGATG CATAGGACTT
ATTAAAGCCA TAAACAAGTT TGACTGCTCA TACGATGTCA AATTTTCCAC CTATGCGGTT
CCGATGATAA TTGGAGAAAT AAAACGCTTT ATTCGCGATG ACGGAATGAT AAAAGTAAGC
CGTTCTCTTA AGGAGCTGGC AAATAAAGCC AGGATCACCA AGGAAATTAT GTCAAAGGAA
TTGGGGCGGG AGCCGACTGT CGGTGAAATT TCGGAGCAGC TCGGCATTCC CGTTGAAGAA
GTGGTTATGG CAATGGAGGC AAGTTGTACT CCTGAATCCT TATACAGTAC ACTGGGAGAG
GGAGACAATT CCTCCACCCT TCTTATTGAT AAAATTGCAA ATGAAAGCGA AAACCAGGAA
GTGGACATTG TAGACAGAAT CGACTTAAGA AAGGTATTGG ATACTTTAAA GCCACGGGAA
AAGCAGATTA TTGTTTTGAG GTATTTTAAA GAAAAAACCC AGGTTCAAAT TGCGAAAATG
CTGGGGATAT CCCAGGTACA GGTGTCAAGG ATTGAAAAGA AGATATTGGA AGAGATCCGA
AAAAAAATAA AATACAATTA A
|
|---|
| Protein sequence | MDELHEKETL ELIAAAKAGD KDAQSLLVEK NVGLVWSIVR RFQNRGYEAE DIFQIGCIGL
IKAINKFDCS YDVKFSTYAV PMIIGEIKRF IRDDGMIKVS RSLKELANKA RITKEIMSKE
LGREPTVGEI SEQLGIPVEE VVMAMEASCT PESLYSTLGE GDNSSTLLID KIANESENQE
VDIVDRIDLR KVLDTLKPRE KQIIVLRYFK EKTQVQIAKM LGISQVQVSR IEKKILEEIR
KKIKYN
|
|---|
| |