| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlab_1545 |
|---|
| Symbol | |
|---|
| ID | 4795948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanocorpusculum labreanum Z |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008942 |
|---|
| Strand | + |
|---|
| Start bp | 1580367 |
|---|
| End bp | 1581464 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640100232 |
|---|
| Product | L-tyrosine decarboxylase |
|---|
| Protein accession | YP_001030976 |
|---|
| Protein GI | 124486360 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0671702 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0000867545 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGAGA AAGGATGCAA AAGGGAGGAG GTCATCTCCC TCCTATCCGC ATATCGGGCA
GAGGATTTGC ATCACGATCA TATCCTCAGT TCGATGTGTA CGATTCCGCA CGAAATGGCG
GTTTTCGTAC ATGGAATGTT TAGTGCAACG AATCTTGGCG ATCCGGGACT TTTTCCGGGC
ACAACAAAAA TCGAAGACCG GCTGGTTCAT TCGCTTGGTG AACTCATGCA TCATCCGGGA
GCCGGAGGAT ATGCGACCTC GGGCGGGACC GAGTCGAATC TTCAGGCGAT CCGTATCGCA
AAAAAACTGA AGCCAGAGAT CAAAAACCCC AACATTGTTG TTCCGGCATC GGCACACTTT
TCATTCGACA AGACCTGCGA CATTCTCGGA CTTGAGATGC GGACGGTTCC TTACGGGAAA
AATTACACCG TCGACTGCGA TAAGATGGCC GAGATGGTCG ATAAAAATAC GATATCGGTT
TCCGCGATCG CCGGAACGAC CGAGTACGGT ATGATCGACG ATGTCGAGAG AATCGCAAAG
ATTGCCCTCG AAAACGATCT GTTCTTCCAC GTTGATGCAG CGTTCGGCGG TATGGTGATC
CCCTTCCTGC CAAATCCTGC ACCATTCGAC TTCGAAGTTC CTGGCGTCTC CTCGATCTCG
CTCGATCCGC ACAAGATGGG TATGAGCACG ATCCCCTGCG GATGTCTGCT TCTCCGTGAA
CCGGAGCAGT TTGGAACGCT CAACGTCGAT ACTCCGTATC TGACCGTAAA GAAGGAATGC
ACCCTTGCCG GAACCAGACC GGGGGCGGAT GTCGCGGGCG CCTATGCCGT CATCAAACTC
CTCGGACGCG AAGGATTCCG TGCGGTCGTA GCCGGCTGTA TGGAAAACAC ACGCCGTCTT
ATCGAAGGGA TGGAGGCATT CGGTTACACC CGTGCCGTCG ATCCGGTGAT GAATGTCGCG
ACGTTCGAAG CAGGACCGGT GCCGAAGGGA TGGATCGTCT CGCATACCCG TGCAGGCCAT
CTCAGATTTG TCGTGATGCC ACACGTGACC CGCGACGTCA TAGAGAATTT CCTCGCCGAC
GTCGCAAAAA TCAACTAA
|
|---|
| Protein sequence | MEEKGCKREE VISLLSAYRA EDLHHDHILS SMCTIPHEMA VFVHGMFSAT NLGDPGLFPG
TTKIEDRLVH SLGELMHHPG AGGYATSGGT ESNLQAIRIA KKLKPEIKNP NIVVPASAHF
SFDKTCDILG LEMRTVPYGK NYTVDCDKMA EMVDKNTISV SAIAGTTEYG MIDDVERIAK
IALENDLFFH VDAAFGGMVI PFLPNPAPFD FEVPGVSSIS LDPHKMGMST IPCGCLLLRE
PEQFGTLNVD TPYLTVKKEC TLAGTRPGAD VAGAYAVIKL LGREGFRAVV AGCMENTRRL
IEGMEAFGYT RAVDPVMNVA TFEAGPVPKG WIVSHTRAGH LRFVVMPHVT RDVIENFLAD
VAKIN
|
|---|
| |