| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlab_0560 |
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| Symbol | dapF |
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| ID | 4796174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanocorpusculum labreanum Z |
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| Kingdom | Archaea |
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| Replicon accession | NC_008942 |
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| Strand | + |
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| Start bp | 534627 |
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| End bp | 535451 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640099218 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001030001 |
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| Protein GI | 124485385 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase
[TIGR00654] phenazine biosynthesis protein PhzF family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.00795649 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCATTA AGTTCCCGAA GCATGACCTT AGGTCGATAG CATTCACGAA ACTTCACGGA
AACGGAAATG ACTTCATTCT GATCGATGAA ATGGATCAGG TCATTATTCC GGATGATATG
AAGGCTCAGT TTGCTGTTGT GTACTGTGAC CGGAGATTCG GTATCGGAGG GGACGGTGTC
CTCTTTATCT CTAAGTCCGA CAAGGCCGAC ATCCGCATGA GATTATTCCA GCCGGATGCA
AGCGAGGCAG AGATGTGCGG CAATGGTATC CGCTGTCTTT CCAAGTATGC CTTCGATAAA
GAGTATGCCA AGAAGAAGGC TTTCTCGGTC GAGACCCTCG CTGGCGTGAT GCAGGTCCGT
GTCGGTTATG ATTCCGACGG GGATTTCATG GCAACCATCG ACATGGGAAC TGCGGTTTAT
GACGAGAGCC GCGAGATCGA CGGTATGACT GTGTATTCGG TAAACACCGG CGTACCGCAT
GCGGTGATTT TTGTCGGCAA TGTTGACGGC ATCGCGATCA ATGAAGTCGC ACCCAAGATC
CGTCACCACC CATCCTTCCC CAAAGGAACC AATGTAAACT TTGTCCAGAT CACCGGCTCG
TCCGAGATCG TCATTCGGAC CTTTGAACGC GGTGTCGAGG GCGAGACACT TTCCTGCGGT
ACCGGTTCTA CGGCGTCGGC ACTTATCGCC GCCAAGACCG GAAAGACCCA CGGAAGTGTT
GTTCACGTAA AGACCGTCGG CGGTCCGCTC GACATCACCG TTGGAGACAT CCCGCAGATG
ACCGGGCCCG CCGCCACGGT CTTTGTTGGA GAAATCCAGT ATTAA
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| Protein sequence | MTIKFPKHDL RSIAFTKLHG NGNDFILIDE MDQVIIPDDM KAQFAVVYCD RRFGIGGDGV
LFISKSDKAD IRMRLFQPDA SEAEMCGNGI RCLSKYAFDK EYAKKKAFSV ETLAGVMQVR
VGYDSDGDFM ATIDMGTAVY DESREIDGMT VYSVNTGVPH AVIFVGNVDG IAINEVAPKI
RHHPSFPKGT NVNFVQITGS SEIVIRTFER GVEGETLSCG TGSTASALIA AKTGKTHGSV
VHVKTVGGPL DITVGDIPQM TGPAATVFVG EIQY
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