Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpe_B0371 |
Symbol | traC |
ID | 4787999 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylibium petroleiphilum PM1 |
Kingdom | Bacteria |
Replicon accession | NC_008826 |
Strand | + |
Start bp | 320102 |
End bp | 322531 |
Gene Length | 2430 bp |
Protein Length | 809 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640092803 |
Product | F-pilin subunit assembly into extended F pili |
Protein accession | YP_001023381 |
Protein GI | 124262911 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.221651 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTGGAT TCCTGAGGCA AGAGCGGGAC AACGTCCCAT TCGCCAATCT CACTGTGATG GCGCATGACC CAGCCACGCG GTTGTTTCAC ATGACCGACG GCGAGGTCAG CTATCTCGGC GCCTGCTTCG TTGGTGACCC GCTGACCGGC GCAGACCAGT CGACCGTGGA CAAGTTCAGC TCCGCCTTCG GAATGCCTTT CCCGGCCGGT ACCTTCGTAC AGATCGGCCT GCTGTCGACG CCCGACGTCG ACGAGTATCT CGACGCCTAC GTCGGCGCGA AGGCGCAAGA CGGCGTCCTC GGCGCTCTCG CTGCTCGCCA CCGCGACCTC ATCTCCTCGG GGCGCGAGAA GCCGCTGGTA TCGCGCTCGG GCATCTACCT GCACCGGCAG CGCCTGGTGA TCACGATCAA GACGCCGCTC CACAACAATC GACCGACCGA GGCCGACATC TCTTCGGCCA AGGAGTATGC CGACCGCCTG CAGGAAGCGC TCAAGGCCTC CGGCCTGCAC ATGGAGGCCC TGGACGCGCC GCGCTACGTC GCGCTCATGC GCCTGATGAC GCACCCTCAC GACCCCATCG ACGACCGCTA CGACGCGCAC AAGCCGATCC GCGAGCAGAT CTTCTTCCCC GGCGATTCGG TCAGCTACGA CGACAAGTCG ACGATCAGCT TCCACGACGG CAAGCACTTC GCCAAGCTGC TGAGCGTGAA GCACTTCCCG AAGCGCGCAA CGCTCGGGCT CATGAACTTC ATCGTCGGAG AGCCGCAGGG GCTGTCGAAC CAGATCACGG AGCCCTACTG GATCACGCTG ACGCTGCACT ACCCCGACCA GGTCAAGAAG GCCGACTGGG TGCGCGGCCG CTCGGCCATG ATCAATCACC AGGTCTTCGG CCCGACGGCA CACATGATCC CGGTGCTCGG CTACAAGAAG GCAGGCATCG ACACCCTGGT GCACGAGATG GAGGGACGTG GCGCGGTCCT CTGCGACGTC AACTTCTCGA TCTTCCTGAT CTCACGAGAC AGGAGCCGTC TCAACAAGTC GATCGCCGGC CTGCAGGCCT ACTACTCGTC GCTCGCCTTC GAGTTCCGCG AGGACAGCCG CATCCTCGAG ACGATGTGGG ACAACCTGCT GCCGCTGAAC GTCAGTGCGC CGGCGATCGA GAAGACCTTC CGTTTCCACA CCATGGCCGT GTCGCAGGCC GTCTGCTTCC TGCCGATCAT CGGCGAGTGG CGCGGCAGCG GCGTGGGCCG CTCGGTTCTG ATGGTTACGC GACGCGGACA GCCGGCCCTG TTCGACCTCT ACGATTCGTC GACCAACTAC AACGGGGTCG TGTTCGCCGA GTCCGGCGCC GGCAAGTCGT TCTTCACACA GAAGCTGGTC TCGGACTACC TGGCGGAGGG CGCCAAGGTG TGGGCGATCG ACGTCGGCCA CAGCTACAAG AAGCTGTGCC GCTCGGTGGG TGGCGAGTTC GTCGAATTCC ACGCCGAGAG CAGGATCTGC CTCAACCCGT TCACGAACAT CGACGGCAAC CTGGACGAGG AGATGGACAT CCTCAAGGCG ACCATCGCCA AGATGGCAGC GCCCGAGGAG TCGCTGTCCG ACTACCAGAT GGCCATCCTC GAGCAGGCGA TCACCAGCGT CTACACGAAG TTCGGCAACA AGGCCAACGT CATCGCGATC GTCGAGTTCC TGATGGCGCA AACGGACAGC GAGGCGCACC GCCTGGCGAA GCAGCTCTAT CCGTTCGCAG GCGGCGCCTA CACGCGCTGG TTCGATGGCG ACAACAATCT CGACCTCGAC AACGCGTTCG TCGTGCTGGA GCTCCAGGAC CTCAAGGGCC GCAAGGCGCT CCAGCAAGTG GTGCTGCTGC AGCTCATCTC GCGCATCAAC CACGAGATCT ACCGCACGCA CGGCCGCAAG AAGATCCTGA TCATCGACGA GGCCTGGGAA CTGCTGGACG ACCCGCTTAT GGCCAAGGCT ATGGAAGCGG CCTATCGCAA GGCACGGAAG CACGACGGCG CTGTTCTGGT CGTGACCCAG TCGCTGGCCG ACCTGTACAA CTCACCCAAC TCGCGCGCGA TCGTGGCGAA CTCGGCCTGG CAGTTCATCC TGAAGCAGAA CGGCGAGGCC GTCGACGCGG CGATCGATGG TGGCCAGTTC AAGATCGAGC CGTACGGCGC GTACATGCTG AAGACCGTGC ACACCGTGAG GGGTGCCTAC TCGGAGGTCA TGGTCAAGCG CGGCGACAAC AGCTGGGGGA TCCTGCGCCT CGTGGTCGAC CGGTTCACCC AGGTCATGTT CTCGACCAGC GGCGCCGAGC GTGATCAGAT CCTCGGCGCA ATCGATCGCG GGGAGGATGT CGTCGAGGCC GTGGATGCGT ACATCGCCAG CGAGAACGAT CGGGCCGGCA GAGAGCTGGA GGCCGCCTAA
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Protein sequence | MFGFLRQERD NVPFANLTVM AHDPATRLFH MTDGEVSYLG ACFVGDPLTG ADQSTVDKFS SAFGMPFPAG TFVQIGLLST PDVDEYLDAY VGAKAQDGVL GALAARHRDL ISSGREKPLV SRSGIYLHRQ RLVITIKTPL HNNRPTEADI SSAKEYADRL QEALKASGLH MEALDAPRYV ALMRLMTHPH DPIDDRYDAH KPIREQIFFP GDSVSYDDKS TISFHDGKHF AKLLSVKHFP KRATLGLMNF IVGEPQGLSN QITEPYWITL TLHYPDQVKK ADWVRGRSAM INHQVFGPTA HMIPVLGYKK AGIDTLVHEM EGRGAVLCDV NFSIFLISRD RSRLNKSIAG LQAYYSSLAF EFREDSRILE TMWDNLLPLN VSAPAIEKTF RFHTMAVSQA VCFLPIIGEW RGSGVGRSVL MVTRRGQPAL FDLYDSSTNY NGVVFAESGA GKSFFTQKLV SDYLAEGAKV WAIDVGHSYK KLCRSVGGEF VEFHAESRIC LNPFTNIDGN LDEEMDILKA TIAKMAAPEE SLSDYQMAIL EQAITSVYTK FGNKANVIAI VEFLMAQTDS EAHRLAKQLY PFAGGAYTRW FDGDNNLDLD NAFVVLELQD LKGRKALQQV VLLQLISRIN HEIYRTHGRK KILIIDEAWE LLDDPLMAKA MEAAYRKARK HDGAVLVVTQ SLADLYNSPN SRAIVANSAW QFILKQNGEA VDAAIDGGQF KIEPYGAYML KTVHTVRGAY SEVMVKRGDN SWGILRLVVD RFTQVMFSTS GAERDQILGA IDRGEDVVEA VDAYIASEND RAGRELEAA
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