| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3724 |
|---|
| Symbol | |
|---|
| ID | 4786013 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylibium petroleiphilum PM1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008825 |
|---|
| Strand | + |
|---|
| Start bp | 3937024 |
|---|
| End bp | 3939321 |
|---|
| Gene Length | 2298 bp |
|---|
| Protein Length | 765 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640092307 |
|---|
| Product | TonB-dependent receptor for iron transport |
|---|
| Protein accession | YP_001022912 |
|---|
| Protein GI | 124268908 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTACA TCCAGGCTCG CAAGCACGCC CATCCCCCAC GACGGACCGC TTCGGCCGCC
GCCGCCTTCG CCGTGCTCGC CATTCCAGCC GCCGTGCACG CCCAGCAGGC TGCAGTGCCC
GCCGACGCCG CTTCGGCGCC GGCCAGCACG CAGGTGCTGC CGGAGATCAA GGCGAAGGCG
GCAGCCGACA ACGGCATCAA GGCCGATGTG TCGGCCTCGC CCAAGTTCAC CCAGCCGCTG
GTGGACACGC CGCAGACCAT CACGGTCATC AAGAAGGAAG TGCTGCAGCA GCAAGGTGCC
ACCTCGTTGA CCGAAGCGCT GCGCAACACG CCCGGCATCA CGCTGCAGAT GGGCGAGAAC
GGCAACACGC AGACCGGCGA CGCGATCTTC ATGCGCGGCT TCGACACCTC GGCGAGCATC
TTCGTCGACG GCATCCGCGA CCTGGGCAGC ATCTCGCGCG ACACCTTCAA TCTCGAGCAG
GTTGAGGTGA TCAAGGGTCC GTCGGGCTCG GACAACGGGC GTGGCGCGTC GTCGGGCTAC
GTCAACATGA TCTCGAAGTC GCCGCAGCTG CAGAACTTCG GCAATGCCAG CGTCACCCTC
GGCACCGACG ACCGCAAGCG CGCCACGCTC GACCTGAACC GCGCACTGGA TCTGGCGATC
CCCGGCTCGG CCTTCCGCCT CAACCTGATG GCGCAGGACT ATGGGGTCCC GGGGCGTGAC
GAGGTGAAGA CCAAACGCTG GGGCTTTGCG CCGTCGCTGG CCTTCGGCCT GGGCACGCCG
ACCCGCACCG TCCTGAGCTA CCTGCACGTC AAGCACGACA ACACGCCGGA TGGCGGCGTC
TCGACCTTTG GTTTGCCCGG CTACATCTTC AGCTCGCCCA CGGCCACCGG CCCCGCGGTG
AACTCGAAGA ACTTCTACGG CTCCCGCAAT GACCACGATG ACGTGACGGT GGACATGCTC
ACCGCGCGCA TCGAGCACAC CCTCGCGCCC GGCTACACGC TGCGCAACAC GACGCGCCTC
GGCCGCGCCG AGCAGGATCT TCTGGTGACG GGTGTGAACG CGGTCAACAC CAGCAGCGGC
GATCCGGCAA CCTACACGGT GGCCCGATCG CGTCAGGGCA AACGCCAGAG CAACGACATC
CTGACGAACC AGACCAACCT GAACGCCGAG TTCAAGACCG GCGCCGTGGA GCACTCGCTG
TCGACCGGCT TCGAGTTGAT CTACGAACGC CAACGCACTA TCACGCCGCA GACGCTCACC
AACACGACCC TGCCCGCCTC GCTGCAGCAG GTGCCCGCGA ACCTGTACGA CCCGAACCGG
AGCGACGTGT TCCTGACGCC GCCGTACAAG GGCGCCTACA CACGCGGAAA CACGCTGAGC
GCGGCGGTCT ATGCCTTCGA CACGCTCAAG CTGTCGGAGC AATGGCTGCT CAATGGCGGC
GTGCGTTGGG AGAAGTTCCA CGCCGAGACC AACGGTTCGA CCTTCACCGC GGCCACCGCC
ACGACGCCGG AGTCGCTGGT CCAGAACGCA CCGTTGTCGC TGACCGACAG CCTGCTGAGT
TGGAAGGTTG GAGCCGTGTT CAAGCCGGCG CCCAACGGCA GCATCTACGC GACCGTGTCC
AATTCCTTCC AGCCGCCGGG CGGCAGCAAC TTCGCGCTCA GCAGCCAGGA GAACAGTGCG
AACCGGCCGG ACCTCGATCC GCAGGAGGGT AGCAACATCG AGATCGGCAG CAAATGGGAT
CTGCTCGACG GCAAACTCTC GGCCGTCGGC GCGATCTTCC GCAGCGAGAA CAAGAACGAG
CTCCTCTCCG ACGGTGCAAC GCCGCCGACC TATTCCCAGG TAGGCAAGCG TCGCGTCGAC
GGCGCCGAAC TCGGCCTGAT CGGCCAGATC ACTCCGGCGC TGAGCCTCAG TGCGGGCCTG
GCCTATATGG ATTCGGAGAT CCTCAAGGGC ACGGCGGCCA ACCAGGGCGG CGTGATCGTC
TTCACGCCGA AGATCACCTT CACCTCCTGG GCCACCTACA AGCTGCCCTT CGGGTTGACC
GTCGGCGGCG GCGCACGGTA CGTGGACACG GTGGCCCGGA GCAGCAATCT CGTGACCACG
AGCAACCTGC TCGAGACGCC CGACTACTGG GTGGCCGATG CGATGCTGGC CTACGACGTG
ACGAAGAATC TGTCGCTGCA GCTCAATATC TACAACGTGT TCGACAAAGA GTACATCGCG
GCGATCAACA ACGGTGGCTC GCGCTACGTG CCGGGCGCCG AGCGCAACGC GCTGCTCACC
GCGAACTTCA GCTTCTGA
|
|---|
| Protein sequence | MAYIQARKHA HPPRRTASAA AAFAVLAIPA AVHAQQAAVP ADAASAPAST QVLPEIKAKA
AADNGIKADV SASPKFTQPL VDTPQTITVI KKEVLQQQGA TSLTEALRNT PGITLQMGEN
GNTQTGDAIF MRGFDTSASI FVDGIRDLGS ISRDTFNLEQ VEVIKGPSGS DNGRGASSGY
VNMISKSPQL QNFGNASVTL GTDDRKRATL DLNRALDLAI PGSAFRLNLM AQDYGVPGRD
EVKTKRWGFA PSLAFGLGTP TRTVLSYLHV KHDNTPDGGV STFGLPGYIF SSPTATGPAV
NSKNFYGSRN DHDDVTVDML TARIEHTLAP GYTLRNTTRL GRAEQDLLVT GVNAVNTSSG
DPATYTVARS RQGKRQSNDI LTNQTNLNAE FKTGAVEHSL STGFELIYER QRTITPQTLT
NTTLPASLQQ VPANLYDPNR SDVFLTPPYK GAYTRGNTLS AAVYAFDTLK LSEQWLLNGG
VRWEKFHAET NGSTFTAATA TTPESLVQNA PLSLTDSLLS WKVGAVFKPA PNGSIYATVS
NSFQPPGGSN FALSSQENSA NRPDLDPQEG SNIEIGSKWD LLDGKLSAVG AIFRSENKNE
LLSDGATPPT YSQVGKRRVD GAELGLIGQI TPALSLSAGL AYMDSEILKG TAANQGGVIV
FTPKITFTSW ATYKLPFGLT VGGGARYVDT VARSSNLVTT SNLLETPDYW VADAMLAYDV
TKNLSLQLNI YNVFDKEYIA AINNGGSRYV PGAERNALLT ANFSF
|
|---|
| |