| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3137 |
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| Symbol | gspE |
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| ID | 4786650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | + |
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| Start bp | 3337187 |
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| End bp | 3338611 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640091708 |
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| Product | pili biogenesis ATPase |
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| Protein accession | YP_001022325 |
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| Protein GI | 124268321 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT
[TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.629616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0029573 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCACCC GCCACCCGCT GCCCTACGCC TACGCGAAGG CCCACTCGCT GCTGCTCGAG
GACAACGGCA GCCAGCTCGT GCTGTGGGCC GGCGACGCCG TCTCGCCGTC CGTGTTGAGC
GAGGTGCTGC GCCTCTACGC CGTCGACGCC CTCGAGCGCG AAGCGCCGGC CGCACTGTCG
CAACGCATCG CCAGCGTCTA TGCCGGCGGC GAGTCGAGCG CCGCTGCGGT GATCGGCGAA
GTCGAGAGTG GCGTCGACCT GTCGCGCCTG ATGCAGGACC TGCCGGCGGT GGAAGACCTG
CTCGAGGCCG CCAACGATGC ACCCATCATC CGCATGCTCA ACGCGCTGCT GACGCAGGCC
GCGAAGGACG GCGCGAGCGA CATCCACATC GAGCCCTACG AGCGCAGCTC GGCAGTGCGC
TTCCGCGTCG ACGGCACGCT GCGCGAGGTG GTGCAGCCGA ACAAGGCGCT GCACGCCGCG
CTGATCTCGC GCCTGAAGAT CATGGCCGAG CTCGACATCT CCGAGAAGCG CCTGCCGCAG
GACGGCCGCA TCTCGCTGCG CATCGGGGGC CGGGCAATCG ACGTGCGCGT GTCCACGCTG
CCCAGCGCGC ACGGCGAACG TGCGGTGCTG CGGCTGCTCG ACAAGGGCGA CAGCACGCGC
TTCACGCTCG AATCGCTGGG CATGAGCGGC GAGACGCTCA CCAAGTTCAA GCGCCTCACG
GCACAGCCTC ACGGCATCGT GCTCGTCACG GGACCGACCG GCTCGGGCAA GACCACCACG
CTGTACGCCG GCCTCGGCCA GGTCGACACG CAGACGACCA ACGTGCTGAC GGTCGAGGAC
CCGATCGAGT ACGAGCTGCC GGGGATCGGG CAGACGCAGG TCAATCCGAA GATCGACCTG
ACCTTCGCCA AATCGCTGCG CGCGATCCTG CGCCAGGACC CAGACGTCAT CATGATCGGC
GAGATCCGCG ACTTCGAGAC CGCGCAGATC GCGATCCAGG CCTCGCTGAC CGGCCACCTG
GTACTCGCCA CGCTGCACAC CAACGACGCG CCCAGCGCCG TCACGCGACT GACCGACATG
GGCGTCGAGC CCTTCCTGCT CAGCAGCTCG CTGCTCGGTG TGCTGGCGCA GCGGCTGGTG
CGCAAGCTCT GCCCGGACTG CAAGAAGCAG GACGACAAGG GGCGCTGGCA CCCGGTCGGC
TGTCCCACCT GCGGCAGCAC CGGCTATAAG GGTCGCACCG GCGTCTACGA ATTGATGGTC
GCCGACAGCG CCCTGCAGAG CCTGATCCAC AGCCGTGCCG CCGAGTCGCA ATTGTTCGTC
GCTGCGGAAC GGGGCGGCAT GAAGACGATG CGCGAAGACG GCGAGCGGTT GGTGGAGAGC
GGGGTGACAT CGCTGGAAGA GCTGTTGAGG GTGACGAGGG AATGA
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| Protein sequence | MATRHPLPYA YAKAHSLLLE DNGSQLVLWA GDAVSPSVLS EVLRLYAVDA LEREAPAALS
QRIASVYAGG ESSAAAVIGE VESGVDLSRL MQDLPAVEDL LEAANDAPII RMLNALLTQA
AKDGASDIHI EPYERSSAVR FRVDGTLREV VQPNKALHAA LISRLKIMAE LDISEKRLPQ
DGRISLRIGG RAIDVRVSTL PSAHGERAVL RLLDKGDSTR FTLESLGMSG ETLTKFKRLT
AQPHGIVLVT GPTGSGKTTT LYAGLGQVDT QTTNVLTVED PIEYELPGIG QTQVNPKIDL
TFAKSLRAIL RQDPDVIMIG EIRDFETAQI AIQASLTGHL VLATLHTNDA PSAVTRLTDM
GVEPFLLSSS LLGVLAQRLV RKLCPDCKKQ DDKGRWHPVG CPTCGSTGYK GRTGVYELMV
ADSALQSLIH SRAAESQLFV AAERGGMKTM REDGERLVES GVTSLEELLR VTRE
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