| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpe_A3052 |
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| Symbol | |
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| ID | 4784914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylibium petroleiphilum PM1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008825 |
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| Strand | + |
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| Start bp | 3244345 |
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| End bp | 3246681 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640091623 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001022240 |
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| Protein GI | 124268236 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.479414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAATCG GCCGCGACGC GCGCCTGCTG GCCGTGAACG AACCGCTGGC GGCATGCACC
GGCTGGCACC GCGACGCCGC CGCCGACGGC GAGGCGTGGC TCGACCGGCT CTCCGCGCCG
TCGCGCCGCG AGCTGCTGAA GGCACTGGAC CATCTCGACA CGGCCGACCG CTTCCGCCTC
GAGCTGCAGT TCCGCCGGCC TGGCGGCGAG GTCGGCTGGC TCGAGTGCGA TGCACGATGG
AACCGCGACA CCGAGCTCTG CCTGTGCGCG CTGCACGACG TGAGCGCGCG CAAGCGCACC
GAGCTCGCGC TGCGCGAGCA GACCACGCAG CTGCGAGTGC TGGCCGACAA CGTGCCGGCG
CTGATCGCCT ACTACGAACA GCAGGGCTTC CGCTGCACCT TCGCGAACCG CCACTATGCG
AGCGCACTGG GCTGGACCCC CGAGAACATC CTCGGCCGCA CCGCGGCCGA GATCGTCGGC
GAGCGCGGCT GGCAACAGAT CCGCCCCTAC ATCGAGCGGG TGGTCGAGAC CCGCGCCCAG
GTGTCCTACG AGCGCGAACT GACCGATGCC GCCGGCCGGC CGCAATGGCT CGAGGTCGAC
GTGCTGCCGA ACTTCGACGA CGAGGGCGAG CTGTCGGGCG CCTTCGTGCG GGTCACCGAC
ATCACCAAGC ACCGGCTGGC CGAGCGCGCC GTGCGCGAAT CGGAAGAACG GCTCGCGAAG
TTCATGCAGG CGAGCGCCGA GGGCATCCTG TTCCACCGCA ACGGCACGGT GATCGACATC
AACGAGCCGA TCTGCGAGCT CACCGGCTAC ACCCGCGACG AGGTCATCGG CCGGCAGACC
GCGGAGTTCC TGGCGCCCGA CCACCTGCCG CGCGCGCAGC AGGCGCTGGC CACCGGCGCC
GAGGCGGCGT GGGAGAGCGT CGCGCTCGGC CGCGCCGGAG AACGCATCCC GGTCGAGCTG
ATCACGCGCT CGATCATGCG CAACGGCGAG CGGCTGCGCC TGGTGATCGT GCGCGACATC
CGCGAGCGTG TGGCCGCGCA GGCGCGCATC CACCACCTCG CGCACCACGA CGCGCTGACC
GGGCTGCCCA ACCGCGCCGC CTTCGGCCTG CAGCTCGAGC GACTCACGGC CTCGCACCGC
AGCGGGGACG CGCAGATCGC GCTGCTGTTC ATCGACCTCG ACCACTTCAA GCGCATCAAC
GACTCGCTCG GCCACCTGGT CGGCGACCTG CTGCTGCAGA CCGTGACGGC GCGCATCACC
GACAACCTTC GCGCCGACGA CCTGGTGGCA CGCTTCGGCG GCGACGAGTT CATGGTGCTG
ATCCCGGGCG TGACCGACCG CAGCGTCGTG GAGCAGGTGG CGGGCAAGCT GCTGGCGGTG
ATCGAGGCGC CGCTCGAGGC CGCGGGCCGG TCGATCTCGG TGTCGCCGTC GATCGGCGTC
TCGCTGTTCC CCGAGCATGG CCGCACGCCG GCCGAGCTGA TCCAGCATGC CGACGCGGCG
ATGTACATGG CCAAGGCGCG CGGTCGCGCC AACGTGCAGT TCTTCGACCC GGTGGTGGCC
AGCGCCGCCT ACGACGCGCT GGTGGTCGAG AGCCAGCTGG CGCAGGCGCT GGAGACCGGG
GCCTTCGAGC TCCACTACCA GCCGCAGCTG CGCTCCGGCG ACGGCCGGCT GGTCGGGGTC
GAGGCGTTGA TCCGCTGGCA CCATCCCGAG CGCGGCCTGC TGCTGCCCGA TGACTTCATC
CCGGTGGCCG AGGAGCGCCG GCTGATGCTG CCGATCGGCC AGTGGGTGCT GCGCGAGGCG
ATGCGCTGCG CCCGGCGCTG GCATGCGCAG GGGCTCGAGC TGCCGATCTC GGTCAACCTC
AGCAGCATGC AGTTCCAGCA GCGCGGCTTC GTCGACTCGC TGGCCGAACT GCTGCGGCAG
GAGCAGGTGA ACGGGGCATG GCTGGAGCTC GAGCTCACCG AGCGCATGCT GATGGACGAC
CTGGACGAGG TGAAGGCCAC GCTGGCGCAG CTCAAGGCGC TGGGCATGCG CATCTCGGTC
GACGACTTCG GCACCGGCTA CTCGTCGCTC GGTCACCTGA AGGAACTGCC GATCGACAAG
GTGAAGATCG ATCGATCCTT CGTGCAGGAC GTGCCGCAGA ACGCCGACGC CGCGGCCATC
GTGCAGGCGA TCGTGCAGCT CGGCCGCAGC CTGGGCATGA CCGTCATCGC CGAGGGCGTG
GAGACCGAGG CCCAGGAGCG CTTCCTGCGC GAGCTGGGTT GCGAGGAACT GCAGGGCCTG
CGGATCGCGC CGCCGCTCTC GGAGGCCGAC CTGCAGCTCT GGGCCTCGCG GCGCTAG
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| Protein sequence | MAIGRDARLL AVNEPLAACT GWHRDAAADG EAWLDRLSAP SRRELLKALD HLDTADRFRL
ELQFRRPGGE VGWLECDARW NRDTELCLCA LHDVSARKRT ELALREQTTQ LRVLADNVPA
LIAYYEQQGF RCTFANRHYA SALGWTPENI LGRTAAEIVG ERGWQQIRPY IERVVETRAQ
VSYERELTDA AGRPQWLEVD VLPNFDDEGE LSGAFVRVTD ITKHRLAERA VRESEERLAK
FMQASAEGIL FHRNGTVIDI NEPICELTGY TRDEVIGRQT AEFLAPDHLP RAQQALATGA
EAAWESVALG RAGERIPVEL ITRSIMRNGE RLRLVIVRDI RERVAAQARI HHLAHHDALT
GLPNRAAFGL QLERLTASHR SGDAQIALLF IDLDHFKRIN DSLGHLVGDL LLQTVTARIT
DNLRADDLVA RFGGDEFMVL IPGVTDRSVV EQVAGKLLAV IEAPLEAAGR SISVSPSIGV
SLFPEHGRTP AELIQHADAA MYMAKARGRA NVQFFDPVVA SAAYDALVVE SQLAQALETG
AFELHYQPQL RSGDGRLVGV EALIRWHHPE RGLLLPDDFI PVAEERRLML PIGQWVLREA
MRCARRWHAQ GLELPISVNL SSMQFQQRGF VDSLAELLRQ EQVNGAWLEL ELTERMLMDD
LDEVKATLAQ LKALGMRISV DDFGTGYSSL GHLKELPIDK VKIDRSFVQD VPQNADAAAI
VQAIVQLGRS LGMTVIAEGV ETEAQERFLR ELGCEELQGL RIAPPLSEAD LQLWASRR
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